Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00321 ATGGAGAATCACAAGATGGTAGCATCGGTGTCTGTTAAGGAGGAGATAGACAATAACCTTGCGGTGCAGGAAGAGGAAGATGTAGCAGATGTGGGTTCCAGCATGACCTTGGAAAGGGTCGCTGCAGCTAAGAAATTCATTGAGGACCATTACAGGTCTCAGATGAAACTCATCCAACAACGCAAAGAGAGGCGTTTAGAGCTAGAACAGAAGTTAGCATCTGCTCATGTACCAGAAGAGGAACAGATCAATCAATTGAAGGATTTAGAGACCAAGGAAACTGAGTTTATGCGGTTAAAAAGACACAAAATATGTGTTGAAGATTTTGAACTTCTAACCATTATTGGGAGGGGAGCCTTTGGGGAGGTAACACTCTGTCGGGAAAAAACATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAGTGACTGCATTGTGAAACTCTATTACTCTTTTCAAGATGATGAACACTTATATCTCATAATGGAATATTTGCCCGGTGGTGATATAATGACTTTGTTGATGCGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAGAGTGTTTTGGCCATAGAATCTATTCATAAACATAACTACATCCACAGCCTATCATCTATTCATGAAATGCAGATCCTCGATGATGGGAACTTATATGATACCATGGATGTTGATGGAGCCTTGCCAAATGGCAGAAATGCTTATCTATTTGTTTCATGGCAGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCCCCTGAAGTATTACTGAAAAAGGGTTACAGTGTGGAGTGTGACTGGTTTATCGTGAACTGGAAAAATCACTTGAAATTTCCAGAGGAGGCCAGATTGACACCTGAAGCCAAGGATCTAATATGCAGGTTGCTTTGTGGTGTTTCACATAGACTTGGCACTAATGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAGAGATGTCGTATGGGACAGGCTCTATGAAACGGAGGCAGCATTTAAACCACAAGTCTTTGGAGAGCTTGACACTCAGAATTTTATGAAATTCGATGAAGTAAGACGTTACGATTTGGCAATGCTTCTTTTCTTCTTTGTCACAATAGATGCAGTTGAACAACCAAAACCAGCTAGATCTGGATCTGGACCCTTCAGAAAGAAACTCTTAACTTCTCAAGATCTCAGTTTTGTTGGCTATACATATAAGAACTTTGCTGCTGTCAAGGGGATGCGTCAATCTAATGGTAGACATGACTACCCCAACCATTGTCTCCTGCCTTTGAGGGACAAGTTGGGCTAG 1380 0.4138 MENHKMVASVSVKEEIDNNLAVQEEEDVADVGSSMTLERVAAAKKFIEDHYRSQMKLIQQRKERRLELEQKLASAHVPEEEQINQLKDLETKETEFMRLKRHKICVEDFELLTIIGRGAFGEVTLCREKTSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVASDCIVKLYYSFQDDEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHSLSSIHEMQILDDGNLYDTMDVDGALPNGRNAYLFVSWQAFSTVGTPDYIAPEVLLKKGYSVECDWFIVNWKNHLKFPEEARLTPEAKDLICRLLCGVSHRLGTNGADEIKAHPWFRDVVWDRLYETEAAFKPQVFGELDTQNFMKFDEVRRYDLAMLLFFFVTIDAVEQPKPARSGSGPFRKKLLTSQDLSFVGYTYKNFAAVKGMRQSNGRHDYPNHCLLPLRDKLG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00321 459 Gene3D Phosphorylase Kinase; domain 1 73 192 - -
Vian4g00321 459 CDD MobB_NDR_LATS-like 43 104 - -
Vian4g00321 459 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vian4g00321 459 Gene3D Transferase(Phosphotransferase) domain 1 299 366 - -
Vian4g00321 459 Gene3D Transferase(Phosphotransferase) domain 1 193 298 - -
Vian4g00321 459 ProSiteProfiles AGC-kinase C-terminal domain profile. 347 438 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian4g00321 459 SUPERFAMILY Protein kinase-like (PK-like) 93 383 IPR011009 -
Vian4g00321 459 SMART pkinase_C_6 347 430 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian4g00321 459 Pfam Protein kinase domain 110 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00321 459 ProSiteProfiles Protein kinase domain profile. 109 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00321 459 FunFam Non-specific serine/threonine protein kinase 70 192 - -
Vian4g00321 459 PANTHER SERINE/THREONINE-PROTEIN KINASE 298 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00321 Vian-Chr4 3563149 3573099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00321 22 440 AGC Kinase Gene Family AT4G33080 59.432 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vian4g00321 Pkinase 3.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00321 K08790 - gmx:100811359 654.055