Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00311 ATGGATGTTTCCGAGTGCGAGTCCCTTCAGAAAGTGAAAGCAAAGGAACAAAACAAGGTTGGTTATCAAAACGGCATTGTTTTGGTGAAGGAAGAAGATGATGTTGAGTGGGGTCCACAACCGTTCGTGAAGAAGATATTGAAAATGGTGGAAGATGAGAGCTTGAACCCAATTGTGTCGTGGGGTGAAGGGCGTTGCAGTTTCGTGATTTGGGATTCTGCTAAGTTCAGCAAAACCATTCTTCCAAACTACTTCAAGCACAGTAACTTCTCTAGCTTCCTTCGCCAACTTAACAACTATGGGTTTAAGAAGGTTAATCCAAAGCGTTGGGAGTTTGCATGTGAAGGTTTTCAACCAGGAAAAAGGCATTTACTGAAGAATATTGTGAGAAGAGGAAGAAAGAATAAGTTGTGTAATGAACAACTTCGAGGTGAAGTTGAGGAGCTGAAGAAGGAGAAGAACGTGTTAGCACTGGAAATTCTAAAGCTCACACAACGGCTTAGGGATTCACAGGTTCAACTTAACAATTTTGAAGAACGGCTTCGGTATGTTGAGTTGAAGCAATATCAGATGTTGGATTTCTTCAGCAGAATGGTCCAAGTGCCTGGTTTTGTTGAGGAATTGGTTCACAAGATTCAGCAGAAAGATGGGGTTGATGGGGCAGACATGGTTAAGAGATGCAAATTGTTGGGACCTCAGTACTATTTGAGCTTCTCTAATAAGGGCACAAACACTAGCTCAAACTTTGGTTATTATAGACAGCAAGGTTGTGAACAAAATGGTATCACCAGCTCCTGTCCTGTGAAAGATGATTCATACATATCTACACAAGGGCTGAGGACTGATGGTTATGATGTGTCACATGCTTATGATGGTGTGTTAGAAGAATTACTGAGTGAGAATTTTGGTGAGGATGTAAATGTAAGTGTGAATGAGTCAAATATATATCTTGAGTTGGAGAGTTTAATTGGATCCACAAGTGGATTGGTGGGGTGA 996 0.4116 MDVSECESLQKVKAKEQNKVGYQNGIVLVKEEDDVEWGPQPFVKKILKMVEDESLNPIVSWGEGRCSFVIWDSAKFSKTILPNYFKHSNFSSFLRQLNNYGFKKVNPKRWEFACEGFQPGKRHLLKNIVRRGRKNKLCNEQLRGEVEELKKEKNVLALEILKLTQRLRDSQVQLNNFEERLRYVELKQYQMLDFFSRMVQVPGFVEELVHKIQQKDGVDGADMVKRCKLLGPQYYLSFSNKGTNTSSNFGYYRQQGCEQNGITSSCPVKDDSYISTQGLRTDGYDVSHAYDGVLEELLSENFGEDVNVSVNESNIYLELESLIGSTSGLVG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00311 331 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g00311 331 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g00311 331 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g00311 331 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g00311 331 FunFam Heat stress transcription factor B-4 35 132 - -
Vian4g00311 331 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g00311 331 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Vian4g00311 331 Gene3D - 35 132 IPR036388 -
Vian4g00311 331 Coils Coil 139 180 - -
Vian4g00311 331 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 38 239 IPR027725 -
Vian4g00311 331 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00311 Vian-Chr4 3451323 3452398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00311 26 233 HSF AT5G54070 45.175 9.55e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian4g00311 HSF_DNA-bind 7.2e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00311 K09419 - gmx:100778060 278.1