Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00306 ATGCACCCCATGGAAAATGTCTTCTCTCTTCCTGTAGCCGCCAGGGCTGATTTTATCCAATTTCTGTTGCAGTCTTTTGGCTGCAGTTACATCTGTCTGTGGGCATATGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACGACCAACCAGGCTCTAGTTTGGGGACTGTGGCACAACAACTTTTCAGACAGTTCAGGACTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTGAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCGAGGATTAAGAGTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGCAGAATTTTCCACGGGACAGTCCCAGCAAATTGATCAAAACCCTCCCACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTCCCTGAGACACTTGGAGGAGCAAGAGTGTCCCCAATGCAGCCAGTGCCAAACACAGCCACTGGTTCTCACCAACAAGCCATTCAAGCACTGGCACAAGCCCCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAGAGCAATCCTCCATGTTATATCTCCAACTTCTCATCAGCACCAAAACTTGCCCTTTGCTCCAGTGGTTCATCCAGACGCCAGTGCTTTCCAGAGGTACAGATCAGACATTGGTCCTAATATAGCTTCCAGTATCAGAAAGCAAAGCTTCATGAAGAGATCTTTTGCATTCTTTACAAACTTAAACTTTATGAGAATGAGAGAACGCATTCAAGCAACGTCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCATTACTTCCTCCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTATCTAATGGCTGAAGTTGATCAACTAAGCAAAAGGAATCAGGGTTTGAAATCACCTTTGCCATCCAAAGAACCTACAACTGAAGAAACCAAGGCTAGATTATCTCCAAATGAAAGATTAAGTGTCCGAGTTTCACATGTACCCGAATCAAGCTCGTCACAGGAGCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAACTTTCTCAAATTGATCTGTCAATCTGCTTATTGGAATTCCTAAAACAGTGTCTCAACATGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGAAATAATGAAATTCATCAACTAACCTTCAGATTAAGGATTATTCAGGGAAGTGATTGGGACGAGTGTACCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTCGGCACAGTACAAAGAGGACTAA 1563 0.4338 MHPMENVFSLPVAARADFIQFLLQSFGCSYICLWAYDSISPNRLCFLDGIYNVRNDQPGSSLGTVAQQLFRQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKSAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPAEFSTGQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVSPMQPVPNTATGSHQQAIQALAQAPLTQFPTPETEHDAIMRAILHVISPTSHQHQNLPFAPVVHPDASAFQRYRSDIGPNIASSIRKQSFMKRSFAFFTNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSYLMAEVDQLSKRNQGLKSPLPSKEPTTEETKARLSPNERLSVRVSHVPESSSSQERMVDLQVNVRGQLSQIDLSICLLEFLKQCLNMSLVSMDANTHIAEGNNEIHQLTFRLRIIQGSDWDECTFEEAVRRVVADSAQYKED 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00306 520 Gene3D - 330 403 IPR036638 GO:0046983
Vian4g00306 520 CDD bHLH_AtbHLH_like 336 388 IPR045239 -
Vian4g00306 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 399 IPR036638 GO:0046983
Vian4g00306 520 MobiDBLite consensus disorder prediction 161 184 - -
Vian4g00306 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Vian4g00306 520 MobiDBLite consensus disorder prediction 390 416 - -
Vian4g00306 520 Coils Coil 337 357 - -
Vian4g00306 520 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 513 IPR044658 -
Vian4g00306 520 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Vian4g00306 520 SMART finulus 337 386 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00306 Vian-Chr4 3414326 3417761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00306 15 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.449 7.72e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g00306 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00306 - - gmx:100807098 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00306 4 3414326 3417761 Vian4g00306 4 3414326 3417761 ECH
Vian1g00554 1 5237210 5240011 Vian4g00306 4 3414326 3417761 PCT