Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00300 ATGAAAGTCGGTCTTTGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCGGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACATGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAGCTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGCAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGGCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGGCATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGGTGCTGCTGGATCAGCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGAATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGCTTTGGGCGTGTTTATAGTGGTGTACTAGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTGGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGAAAAATAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGCTCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAGAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCAAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGATGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCTTTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGACGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCGGTTGATTTCAGTCATTCTAGACAAGTATCAGATAATTTTCAAGGCCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATAGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAGCGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 1875 0.4352 MKVGLCLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANMQPDKTIVFIDLVPLGENFDNTTAFLASERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISKRQHKGGISKGMIAVISLSVFLVVVLCFAAAWALFKFRDHSSKLASTPHVLSPPLTKAPGAAGSAVGGRLASASTSFRSSIAAYAGSAKTFSMNDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKKNSPLDWSARIKIALGSARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENRLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00300 624 ProSiteProfiles Protein kinase domain profile. 241 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00300 624 Gene3D Transferase(Phosphotransferase) domain 1 317 546 - -
Vian4g00300 624 PANTHER OS01G0750732 PROTEIN 1 540 - -
Vian4g00300 624 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
Vian4g00300 624 FunFam Receptor-like serine/threonine-protein kinase ALE2 317 535 - -
Vian4g00300 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Vian4g00300 624 SUPERFAMILY Protein kinase-like (PK-like) 222 514 IPR011009 -
Vian4g00300 624 Pfam Protein tyrosine and serine/threonine kinase 244 514 IPR001245 GO:0004672|GO:0006468
Vian4g00300 624 CDD STKc_IRAK 247 515 - -
Vian4g00300 624 Gene3D Phosphorylase Kinase; domain 1 213 316 - -
Vian4g00300 624 FunFam receptor-like serine/threonine-protein kinase ALE2 214 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00300 Vian-Chr4 3287663 3290183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00300 1 620 Receptor kinase-like Gene Family AT5G56890 65.354 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vian4g00300 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00300 - - vum:124841563 1168.3