Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00296 ATGCATGAACCAATGATACCAACTTATCGTTATTCAGTGGTGTCTTCACCTATGTCTATAGATCTCAATGAAGATCATACACACACTCTCTTCAGCACAATCCATCAAGTCTCTTCTTCATCTTCTTCTTTATCTACTTCTATTCTCTTCAACCCAGATCAGGATCAAGGAAGATTTCGCTATTGTGGATCAAAACATCTTCAAGAGGCCCAGAAGATTGTCTGTTTCGGTGGATCATGGGATCATCAAGCAGAAAAGATTGAAAACAGAAGTGATCTCCAGCTTAGACTTTGGAAGAAAGAAGAGTGTGACAATCTTCAAGGCGAAGACAGTTCAACTAACTGGATGCCTTCAAAGATGAGAATGGTGCGGAAAATTATGATTTCAGATCAAACGGGTTCTCATATGGCAGATATCTCTAATTCTAAGAAGATGAAGGCTAAAGAGAAAAACCCAACACTGTCACAGCTGGTAACTGATGATAGTAACTACAACTCTTCTTCAAACAAGAACAGTCTCACAGCTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCTAAGTCTCTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGCGCTACTGCTGCAGCTGCAACAAAGGCAAATGGAACAAATAAGTTGGAGGCTAAGAAATCTGAAGTGAAGAAGGGGAAAAAGTTGCATAGCAAAGGGAAAAAGCCCAAAACTGGGGGTGCACCAGTGCTGGTGAAAAAGAAGCGTAAAGCAGCCAAGCATAGAAAGAAGTTCGGTGCTTTTGAGGATTTGTCAGTAAGATTCCAACAAGTTTTCCCTCAGGATGAGAAAGAAGCTGCAATCTTGCTCATGGCTTTATCTCATGGACTACTTCATGGCTTCCCCACAGATCGCTACATCTCTTAG 939 0.4239 MHEPMIPTYRYSVVSSPMSIDLNEDHTHTLFSTIHQVSSSSSSLSTSILFNPDQDQGRFRYCGSKHLQEAQKIVCFGGSWDHQAEKIENRSDLQLRLWKKEECDNLQGEDSSTNWMPSKMRMVRKIMISDQTGSHMADISNSKKMKAKEKNPTLSQLVTDDSNYNSSSNKNSLTARVCADCHTTKTPLWRTGPTGPKSLCNACGIRQRKARRATAAAATKANGTNKLEAKKSEVKKGKKLHSKGKKPKTGGAPVLVKKKRKAAKHRKKFGAFEDLSVRFQQVFPQDEKEAAILLMALSHGLLHGFPTDRYIS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00296 312 Gene3D - 172 220 IPR013088 GO:0006355|GO:0008270
Vian4g00296 312 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
Vian4g00296 312 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
Vian4g00296 312 MobiDBLite consensus disorder prediction 236 252 - -
Vian4g00296 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 5 304 - -
Vian4g00296 312 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Vian4g00296 312 MobiDBLite consensus disorder prediction 217 252 - -
Vian4g00296 312 CDD ZnF_GATA 177 207 IPR000679 GO:0006355|GO:0043565
Vian4g00296 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 212 - -
Vian4g00296 312 SMART GATA_3 172 223 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00296 Vian-Chr4 3224995 3226382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00296 111 304 C2C2-Gata Transcription Factor Family AT4G26150 37.991 1.67e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian4g00296 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00296 - - vun:114162648 487.263