Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00291 ATGGAAGATGATGAGGCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGGAGCCATGTCACCAAGAAGGAGAAGCAGAAACTCCCTTCTTTGGACCTAACGTTTCAGATTTGTCCAAAGGGGGAGCAGACCATTCACGTGGATAAACAACGACAACAACATCTTCTTCATGATGATAAGGCAAAAGGGTTGTTATGTTTGAAGCACCCCACGGAAAATAACAGCCCTGATAGCAGCAACAACAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTACCAAGGACCAGTCAGCCACCCTTGAGGATATTTTCAAGCTGCATAGCACTCTTAATCCCGCACAGAAGCAGGCACTTGCTGATCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACGGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTGTCGAAGGCCACAACCTTGAGCATTTGTTCATCGTGCGAGAAAGAATTGAAGCCTAATGAAGGGAAGAAAGGAGGCATTTCCGATGTGGTCCGAAACAGCAGCCAAAAATTGCAGAACAGCGTAGGGGTAAAGGGCATTTAG 705 0.4511 MEDDEACITSLSLGLGMGSHVTKKEKQKLPSLDLTFQICPKGEQTIHVDKQRQQHLLHDDKAKGLLCLKHPTENNSPDSSNNSSNGSRKKLKLTKDQSATLEDIFKLHSTLNPAQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLSICSSCEKELKPNEGKKGGISDVVRNSSQKLQNSVGVKGI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00291 234 SMART halz 144 187 IPR003106 GO:0006355|GO:0043565
Vian4g00291 234 Pfam Homeodomain 88 142 IPR001356 GO:0003677
Vian4g00291 234 Coils Coil 143 177 - -
Vian4g00291 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 206 - -
Vian4g00291 234 MobiDBLite consensus disorder prediction 68 93 - -
Vian4g00291 234 SUPERFAMILY Homeodomain-like 72 145 IPR009057 -
Vian4g00291 234 CDD homeodomain 88 145 IPR001356 GO:0003677
Vian4g00291 234 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Vian4g00291 234 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Vian4g00291 234 SMART HOX_1 86 148 IPR001356 GO:0003677
Vian4g00291 234 Pfam Homeobox associated leucine zipper 144 177 IPR003106 GO:0006355|GO:0043565
Vian4g00291 234 Gene3D - 66 143 - -
Vian4g00291 234 MobiDBLite consensus disorder prediction 72 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00291 Vian-Chr4 3170096 3171189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00291 78 202 Homeobox Transcription Factor Family AT3G60390 66.400 1.03e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian4g00291 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00291 - K09338 gmx:100790522 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00577 1 5533102 5534275 Vian4g00291 4 3170096 3171189 PCT