Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00286 ATGTTAAGACAGTGGTTGGTTGTGAAGTACAGTGAGTTGAAGAAAAGGAAAAACAGAGAAAAAAGGAATGATGAAGGAAAGTGGGATCCACCACCAACACCTCTTTTGGACCTTCACATGGATATGGTGGATCCTGTTCCCAGAACCAGGATGGAGGAACAATTAGCAATACAAGAAGCTGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTCATTCGCCTCCTTTCTCCCTCTCCCTGCAATTCTTCTTTTTCTTCTAACAACAACAACCTCGACTGCTCCCAAATCACCGACTTCACCGTCTCCAAGTTCAAACAGGTCATTAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGTGCACCGTCCCAACCCCAACCCCAGGCCCCACCGCAACCAAACCCACAACCACAACTTCAAGCCCAACAAGGTTTCACTTTGGATTTCGTTAAACCCACCATTCTCAACTCTAAGCCCTGCAACAAAGACGAAACTCTCACTCTCTCCACAACCACCACCACCTCCTCTTCCTTTTTATCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGAAAGCTCGGTCCTTTCCTCCCTCCCTCCGCCGCCAAACCTCCTCTCTCCTCATCCCACCGGAAAAAGTGCCGCGACGCCGCGCTCTCCACCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACAATCCATCAGAGTCCCGGCGATAAGTTCCAAGATCGCCGACATCCCGCCGGACGAGTACTCGTGGAGGAATGGGTACTACAAGTGCAGCACCGTCAAAGGGTGTCCGGCGAGGAAGCACGTGGAGCGCGCGCAAGATGACCCGAAGATGCTGATAGTGACGTACGAGGGCGAGCACCGTCACGCGCTTCCGTTGCCTGCCGCTACTGGCGGTGGTTTCGGGCTTTGA 939 0.5378 MLRQWLVVKYSELKKRKNREKRNDEGKWDPPPTPLLDLHMDMVDPVPRTRMEEQLAIQEAASAGLKSMEHLIRLLSPSPCNSSFSSNNNNLDCSQITDFTVSKFKQVINLLNRTGHARFRRAPSQPQPQAPPQPNPQPQLQAQQGFTLDFVKPTILNSKPCNKDETLTLSTTTTTSSSFLSSVTNDASVSDGKLGPFLPPSAAKPPLSSSHRKKCRDAALSTKPSCHCSKKRKSRVKQSIRVPAISSKIADIPPDEYSWRNGYYKCSTVKGCPARKHVERAQDDPKMLIVTYEGEHRHALPLPAATGGGFGL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00286 312 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 54 301 IPR044810 GO:0003700
Vian4g00286 312 MobiDBLite consensus disorder prediction 120 140 - -
Vian4g00286 312 Gene3D WRKY domain 208 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g00286 312 ProSiteProfiles WRKY domain profile. 262 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00286 312 SMART WRKY_cls 253 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00286 312 SUPERFAMILY WRKY DNA-binding domain 251 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g00286 312 MobiDBLite consensus disorder prediction 16 36 - -
Vian4g00286 312 Pfam WRKY DNA -binding domain 262 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00286 312 Pfam Plant zinc cluster domain 212 251 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00286 Vian-Chr4 3111240 3112825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00286 43 298 WRKY Transcription Factor Family AT2G24570 48.860 4.00e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g00286 WRKY 5e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00286 - - gmx:100127391 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00286 4 3111240 3112825 Vian4g00286 4 3111240 3112825 ECH
Vian1g00583 1 5601578 5602793 Vian4g00286 4 3111240 3112825 PCT