Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00281 ATGAGTAGTTTCCTGAACGGTGCTTCACCGATGCAGCAAGCGGCGGAGACGGAGAGGGAGAGTGATATTGAGGCTGGTCCTACCACTCACCGCTCCACTGACCTCGATGATGGAGATTTATCCGATCCGTTTGATATTGCCAGAACTAAGAATGCTTCCATTGAACGCCTCAGGCGTTGGAGGCAAGCAGCACTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTCGAGCGCATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGTGCCAGGAAATGAACCTATTAAACCTCCTCCGACCCCAATTGCTGGTGAATTTCCAATTGGACAAGAACAACTTGCTTCAATTTCGAGGGAGCATGACACTACTGCTCTGCAACAATATGGAGGGGTTGTAGGATTATCAGTTTTGTTGAAAACCAATTTAGAGAAGGGAATTCAAGGTGATGATGCTGATTTACTGAAACGTAGGAATTCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAGGTTTTCTGATGTTTATGTGGGATGCTTGTAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCACTGGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTATTAGAGGCGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTAAATATTGGTGACCAGGTCCCTGCTGATGGAATTCTTATCAGTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACAATGCTGGTTACGGGTGTTGGTATCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCTGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTGTCGTCCTGGTTGTGCTACTGGCTAGATATTTCTCTGGGCATACTGAAAACCAGGATGGTTCGCCTCAATTTAAAGCTGGCAAGACTAAAGTTGGTGATGCTGTTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATCGTTGTGGTTGCAGTTCCGGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACTATGAATGAGATGACTGTGGTTGAGGCTTATGCTGGGGGTAAGAAAATTGATCCTCCCCACGAATTGGAGAATACTATGCTTCGCTCCCTGCTCATTGAGGGTGTTGCGCTGAACACTAATGGTAGTGTTTATGCACCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCACCAACGGAAAAGGCAATTTTACATTGGGGAATACAGCTTGGGATGAATTTTACGGATGCTAGATCAAAGACATCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAGAGAGGCGGTGTTGCATTACAAACGGCCGACTCTAACATCCATATACACTGGAAAGGTGCTGCCGAGATAGTCCTAGCCTGCTGTACTGGCTATATTGATGCAAACGACCAGCTGGTGGGGATGGATGAAGAGAAGATGTCATTTTTCAAAAAGGCTATTGAAGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATCATACGAAAAGGAAAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCGGAGGATGATCTTATTTTACTGGCTATTGTTGGTCTTAAGGATCCTTGCCGACCTGGTGTAAAAGATGCAGTGCTACTTTGTCAAAAGGCTGGGGTTAAGGTGAAAATGGTCACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTCGCTGATGCTACAGAACCAAACATCATTGAAGGAAAAACATTTCGTGGCCTGTCAGATGCAGAGAGAGATGAAATTGCTGATAGGATATTGGTAATGGGACGGTCATCTCCCAATGACAAATTATTGCTAGTACAAGCATTGAGGAGGAAAGGTCATGTTGTTGCTGTAACTGGTGATGGAACAAATGATGCTCCTGCCCTTCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAGGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTCAGATGGGGACGATCTGTCTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCCCTAGTGATAAATGTTGTTGCTGCAGTTTCTACTGGTGCTGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGACACCCTGGGAGCGCTAGCCCTGGCAACGGAACCACCAACTGATCATCTCATGGATCGAACTCCTGTTGGTCGAAGAGAGCCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTATCTGTCTTACTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTTTGAACCAAGACAACAATGTGCATGCAATCAAAGTGAAGAACACTTTGATATTTAACGCATTTGTTCTCTGTCAAATATTTAATGAATTTAATGCTCGAAAGCCAGATGAATACAACATATTTAAAGGAGTCACAAGAAACTACCTCTTTATGGGTATAATTGGATTAACTCTTGTGCTTCAGATTGTCATCATTGAATTCCTGGGCAAGTTTACAAAAACAGTAAGGCTAAATTGGAAGCAGTGGATCATCTGTGTCATTATCGGATTCATTAGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCAGTGCCAACTACTCCTATCAATAACGTTTTTTCGAAATGTGGAACGTCTAAAAGCAAGGAACGCGATGAATCTCAGTAG 3264 0.4252 MSSFLNGASPMQQAAETERESDIEAGPTTHRSTDLDDGDLSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGVPGNEPIKPPPTPIAGEFPIGQEQLASISREHDTTALQQYGGVVGLSVLLKTNLEKGIQGDDADLLKRRNSFGSNNYPRKKGRGFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLVVLLARYFSGHTENQDGSPQFKAGKTKVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNEMTVVEAYAGGKKIDPPHELENTMLRSLLIEGVALNTNGSVYAPEGANDVEVSGSPTEKAILHWGIQLGMNFTDARSKTSIIHVFPFNSEKKRGGVALQTADSNIHIHWKGAAEIVLACCTGYIDANDQLVGMDEEKMSFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCRPGVKDAVLLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFADATEPNIIEGKTFRGLSDAERDEIADRILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGAVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLNQDNNVHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGVTRNYLFMGIIGLTLVLQIVIIEFLGKFTKTVRLNWKQWIICVIIGFISWPLAVIGKLIPVPTTPINNVFSKCGTSKSKERDESQ 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00281 1087 SFLD Haloacid Dehalogenase 475 851 - -
Vian4g00281 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 1063 IPR023298 -
Vian4g00281 1087 CDD P-type_ATPase_Ca_PMCA-like 175 932 - -
Vian4g00281 1087 Gene3D - 174 369 - -
Vian4g00281 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Vian4g00281 1087 SUPERFAMILY Calcium ATPase, transduction domain A 271 366 IPR008250 -
Vian4g00281 1087 MobiDBLite consensus disorder prediction 1 44 - -
Vian4g00281 1087 FunFam Calcium-transporting ATPase 503 699 - -
Vian4g00281 1087 Pfam E1-E2 ATPase 271 471 - -
Vian4g00281 1087 NCBIfam HAD-IC family P-type ATPase 766 884 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00281 1087 NCBIfam HAD-IC family P-type ATPase 434 517 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00281 1087 PRINTS P-type cation-transporting ATPase superfamily signature 692 703 - -
Vian4g00281 1087 PRINTS P-type cation-transporting ATPase superfamily signature 799 818 - -
Vian4g00281 1087 PRINTS P-type cation-transporting ATPase superfamily signature 823 835 - -
Vian4g00281 1087 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Vian4g00281 1087 PRINTS P-type cation-transporting ATPase superfamily signature 317 331 - -
Vian4g00281 1087 PRINTS P-type cation-transporting ATPase superfamily signature 714 724 - -
Vian4g00281 1087 FunFam Calcium-transporting ATPase 816 1065 - -
Vian4g00281 1087 SUPERFAMILY HAD-like 491 904 IPR036412 -
Vian4g00281 1087 Pfam Cation transporting ATPase, C-terminus 884 1061 IPR006068 -
Vian4g00281 1087 PANTHER CATION TRANSPORTING ATPASE 97 1063 - -
Vian4g00281 1087 Gene3D - 52 107 - -
Vian4g00281 1087 MobiDBLite consensus disorder prediction 17 44 - -
Vian4g00281 1087 FunFam Calcium-transporting ATPase 248 369 - -
Vian4g00281 1087 PRINTS Sodium/potassium-transporting ATPase signature 236 256 - -
Vian4g00281 1087 PRINTS Sodium/potassium-transporting ATPase signature 486 507 - -
Vian4g00281 1087 PRINTS Sodium/potassium-transporting ATPase signature 610 628 - -
Vian4g00281 1087 FunFam Calcium-transporting ATPase 52 108 - -
Vian4g00281 1087 SMART Cation_ATPase_N_a_2 152 223 IPR004014 -
Vian4g00281 1087 Gene3D - 503 699 IPR023299 GO:0000166
Vian4g00281 1087 Pfam Cation transporter/ATPase, N-terminus 155 218 IPR004014 -
Vian4g00281 1087 NCBIfam calcium-translocating P-type ATPase, PMCA-type 142 1063 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vian4g00281 1087 FunFam Calcium-transporting ATPase 201 258 - -
Vian4g00281 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 704 IPR023299 GO:0000166
Vian4g00281 1087 Gene3D - 490 844 IPR023214 -
Vian4g00281 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 40 84 IPR024750 GO:0005516
Vian4g00281 1087 FunFam Calcium-transporting ATPase 9 plasma membrane-type 347 517 - -
Vian4g00281 1087 Gene3D - 201 1053 - -
Vian4g00281 1087 MobiDBLite consensus disorder prediction 1 16 - -
Vian4g00281 1087 Pfam haloacid dehalogenase-like hydrolase 490 813 - -
Vian4g00281 1087 SFLD p-type atpase 475 851 IPR044492 -
Vian4g00281 1087 FunFam Calcium-transporting ATPase 692 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00281 Vian-Chr4 3028221 3047742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00281 9 1070 Primary Pumps ATPases AT5G57110 74.882 0.0 1610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00281 K01537 - gmx:100792945 1896.71