Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00273 ATGGAGAATATTGGTGAAGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAAGAGCTTGACAGTAATTGGGGGTTCGAGGAGGCTTTATCAGGCTACTACGATTCCAGTTCCCCTGATGGTGCTGCTTCATCTGCAGCATCTAAGAACATTGTTTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCTATTGACTACATCCAGCATTTGCACGAGCAAGAGAAGATAATCCAAGCTGAGATCATGAATCTTGAATCCGGGATGCCAAACAAGAGTAGTTCGAGCTATGACTTTGAGCAGGAACAGCTTCCTGTGGTGCTGAGGTCCAAGAAGAAGAGAACCGAGCAGATATACGATTCAGTCATTTCAAGAAACTCCCCAATTGAAGTCCTTGATCTGAGCGTGACCTACATGGGGGAGAAAATTGCCGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAACATAACTTCGTTTTCAGGGAGGCTTCTGAAAACAGTCTTCATCGAGGCCAATGGAGAAGATAAGTATCATTTGGAGATAAAGATCCAGACAGCCATTGCAGCTCTTAACGAACCTCTGAGTCCCATGAGCATTTAA 738 0.4472 MENIGEEYKHYWETTMFLQTQELDSNWGFEEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKIIQAEIMNLESGMPNKSSSSYDFEQEQLPVVLRSKKKRTEQIYDSVISRNSPIEVLDLSVTYMGEKIAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANGEDKYHLEIKIQTAIAALNEPLSPMSI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00273 245 Gene3D - 45 114 IPR036638 GO:0046983
Vian4g00273 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Vian4g00273 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 113 IPR036638 GO:0046983
Vian4g00273 245 SMART finulus 54 103 IPR011598 GO:0046983
Vian4g00273 245 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Vian4g00273 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 47 228 - -
Vian4g00273 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00273 Vian-Chr4 2901897 2907850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00273 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.468 1.38e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g00273 HLH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00273 - - vun:114163278 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00273 4 2901897 2907850 Vian4g00273 4 2901897 2907850 ECH
Vian1g00599 1 5820445 5825314 Vian4g00273 4 2901897 2907850 PCT