Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00271 ATGGCGACGGAGCAAACCAAATTCAGCGTGTTGTGCAGCCTCTTCACGTGGACGCAGCGGAGCAAGTCGGCGGCGAAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGACGCCTTCTGCATTGACCGCAACTTCTTCCCCGCTATTCGCCTCATTCTCCCCAACCTCGATCGCGAGCGCGGCTCCTATGGCCTCAAGGAGTCCGTTCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGTGACTCCCCCGATGCCCTCCGACTCATCAATTGGCGTAAGGGTGGCGCCGCCACCGGCGCTACAGCAGGAAATTTCGCCCTCGTCGCCACCGAGGTGCTGCACCGCAGGCAAGGGACCGCTTCAGGAGGGTTGACGATAAGGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAACTAGTATGTGAAAAGCTAAGGGATCGGAATCAGCGGCATAAACGGCAGGATATTGAAGTTGGGAAAGCTGTCCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCCAAGGCAGCAAGAGATGGACTTGATAGTGACAGACAGCTTTCAAACATTAATTCCTGTCAAGAAATTTGATATGGTTTTGATTTCAATGGAAGAATGCATATCTATAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGGTTGGAAGTTTTGGTGCCTAATGCTGGTATCAACAGTCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAAAGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCACAGCTCTAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGCGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCAATCACCAAATGCACAACCTATGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGATGTTGTAATAACCAAATTAAAACCATACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGATGTTCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGACTGTTATGAGCAAAAAAAGCTTGTCTGCTTACAGCCCAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGACTCTTTCTACATGGACCTAGATCTTGGAGACATCAAGCAGCTCTTAAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAACACCTTCATCGAAAGGAGATTGGCATTATATATTACAACTTGCTTTGAGGAGATTCAAGCTTGAGGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTCTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCTGACTGACTTTGAACAAATACTGAGTAGCACTAAAAAACGAAGAAAGCAGGAAGGACTAGAGGTAGGAAAAGGAGTAGGGATTTCTCGTTTCACTTCAGTAGAAAGGAAAATTCTCCGAAGCAAGAGGTTGTATATAGTTAATTCCCAGTGGTTGGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGACAACTGCTGAAGATTGTGGACTGGACTTGGCGTTAGAGGCTCATCAGTGTGGAGATAACACACAACACCAAAATACATCTTTCTCTGACAAGGGAAATCGGAAAAGAAGTGAACAAGTTGCATGCGAAGACAGTATGGCCTTCTTATCCCGAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGTGGGCAGTGGCATAAAAAATGTAAAACCAACTGGCAAACAAACTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTACTAAAATATGGGAATACGAATCATCGGATGAAAGCGATTCTCGTGACAAGCAGGAGATTGACACCAGAGCAGGAAGTCTTAACTTTTATAAGAAACATTCAGAACCCCAGGAGAATGAGGAACGGGAAAATGTCCAAGTTTCTAGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGACAACAAGCTGGAGGACTTGAAGGACAATGATCATGAAAGAATGTTGATTCCTGAAATAGAAATGACTGATAGGTACAATGACCAAAAGAATGAGGTGGTAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTACTCTTGGCACCCAAAAAGTTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAACTAGCAGAAACCTCCAATGCAGAAACAGAGCCTATAACTACAAAGAAAAACAAGGTTAGCTTCATGGATGCTGCCAATGAGCTGCTGAAGGACTGGTAG 3099 0.4308 MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVATEVLHRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKPRQQEMDLIVTDSFQTLIPVKKFDMVLISMEECISIDTSVIHQSLKERHEILCKVVRPMKGRLEVLVPNAGINSHLTSGEPCWSFIAHKVDEVERFFKETIENRDEGIVLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERQSPNAQPMRFISFCRVGTGLSDEELDVVITKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYMDLDLGDIKQLLSNISKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTATPSSKGDWHYILQLALRRFKLEVLMGGGKVTSNLTSATHLVAFLVPGCLTDFEQILSSTKKRRKQEGLEVGKGVGISRFTSVERKILRSKRLYIVNSQWLEDCSDSSQRLPEDSYSLKPWGIEETTAEDCGLDLALEAHQCGDNTQHQNTSFSDKGNRKRSEQVACEDSMAFLSREKGIKRKRGRPVGSGIKNVKPTGKQTRRARPQNVKKPTKIWEYESSDESDSRDKQEIDTRAGSLNFYKKHSEPQENEERENVQVSRTVESSEQNKVDNKLEDLKDNDHERMLIPEIEMTDRYNDQKNEVVEKLDFSADPLQAMLFDMIPTLGTQKVEQPMNLSVREEKLAETSNAETEPITTKKNKVSFMDAANELLKDW 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00271 1032 PANTHER DNA LIGASE 4 279 548 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vian4g00271 1032 Gene3D - 375 532 IPR012340 -
Vian4g00271 1032 Coils Coil 906 926 - -
Vian4g00271 1032 Pfam ATP dependent DNA ligase C terminal region 396 515 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vian4g00271 1032 MobiDBLite consensus disorder prediction 832 929 - -
Vian4g00271 1032 FunFam DNA ligase 375 536 - -
Vian4g00271 1032 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 6 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vian4g00271 1032 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 278 372 - -
Vian4g00271 1032 ProSiteProfiles ATP-dependent DNA ligase family profile. 265 409 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vian4g00271 1032 ProSitePatterns ATP-dependent DNA ligase signature 2. 348 372 IPR016059 GO:0003909
Vian4g00271 1032 Pfam DNA ligase IV 591 624 IPR021536 GO:0003910
Vian4g00271 1032 MobiDBLite consensus disorder prediction 802 821 - -
Vian4g00271 1032 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vian4g00271 1032 Gene3D DNA ligase/mRNA capping enzyme 241 374 - -
Vian4g00271 1032 FunFam DNA ligase 2 219 - -
Vian4g00271 1032 SUPERFAMILY BRCT domain 636 776 IPR036420 -
Vian4g00271 1032 Pfam ATP dependent DNA ligase domain 279 372 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vian4g00271 1032 MobiDBLite consensus disorder prediction 867 917 - -
Vian4g00271 1032 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vian4g00271 1032 Gene3D BRCT domain 642 774 IPR036420 -
Vian4g00271 1032 ProSiteProfiles BRCT domain profile. 684 774 IPR001357 -
Vian4g00271 1032 SUPERFAMILY Nucleic acid-binding proteins 380 531 IPR012340 -
Vian4g00271 1032 Gene3D BRCT domain 533 625 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00271 Vian-Chr4 2873235 2888749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00271 326 532 Core DNA Replication Machinery Family AT1G08130 29.302 1.22e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00271 K10777 - gmx:100816002 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00271 4 2873235 2888749 Vian4g00271 4 2873235 2888749 ECH