Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00267 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTGGAAAATCCAGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTTTCATCAAAATTAAAAGCAAGTAGCACAAAAAACAGAAGGAAGGAACACAAAGAGAAGTCAAGATCTCATAAACTCAGAGTTGGTACAAACACATCAAAGAAAAGAGTTGCTGATTCTTCTATCAAGGCATCACTTGAGGACTCTTCAAATAAAAAAGTGATTATTAGAAAAACACTCCATAAAACTGATGGGAACTCTTCACGTATGGTGTCTTCAACAAAGCTACAAGGAAGAAAGAATCCTCATAGTTCTAGAAAAGAGGGGAATGGTGTTGATGAAGAGGCAAAAATTAAAAAACGTAAAAGGAACAAAAAGAAGAGCAGACAAAGAGACAGCATAGATCATGACGATGCTTCACGCCTTCGAAGGAGAACAAGATACCTCTTAATAAAAATGAAGCTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCGAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGACGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGTAATCGGGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATTATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTTAAGGAAGAGGCTGCTGTGCCTGATGGTGATATTGCATTACTAAGTCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAGAGAAGGCAGCCACAGCATAAATACAGAAGGTGCTGATGAAATTGCATCCAATGATTCCACCAGTTCTTTGAGTTTGTGGTCTTTGAATGAAGAATGTCCTCCTGCTGATGACAACCTTAGTCGACAATATTATTCTGTCAATAGCTTCATTGATTCTGATGAATCCGGGGAAATAGCATGCGGCCGTAGGCAGCGCAAAGCTGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGCTCTACCTTGTGAACAACTGAGTGAAGATGAAGACTGGGGCCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACCCTACATGAAAGTGAAAATAAGCATCCCAATAATGAGAGTAGTGATAGAATAAGAGAGGGCTCTTCCGGCCTACAAATAAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGGCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCCGTGAAGGAGGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACATCTCAGATATCAAAACATTCTACATCTCCAAACATGGAGAAATCACAAGTCCCCAAAATTACTTTGATTCATTCCCAGAAGGATGGTCAAAGCATCACGGGCCAAGAGAAAAATAAATTATGCAACAGTCTTTTGAAGAGAAGGAAGCAAAAACCATCTCCACCTCTGTCAAGAGAAAACAGCAACAAGGAATCCATGGAGATGAGTGATGATGTTAATTTGAAGAAGCTTTTGAAAGAAAGGAAAAAAAGGGTAAATTTTATATATGGAGACTCTCAGATAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCGAAAACTAAATGAAGTTCAAAATTGCAGAGCTAAGGGATCAACAAATGAACCCTCTATTATATATGTTCCCACAGCCCAATTAAGGGAAAAAGGTTGA 2124 0.3903 MRDAENLNKKGSGKSSYSKEQIKSKLFSSKLKASSTKNRRKEHKEKSRSHKLRVGTNTSKKRVADSSIKASLEDSSNKKVIIRKTLHKTDGNSSRMVSSTKLQGRKNPHSSRKEGNGVDEEAKIKKRKRNKKKSRQRDSIDHDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDVFKEEAAVPDGDIALLSPEEEWPSDDPEDDDYNPERREGSHSINTEGADEIASNDSTSSLSLWSLNEECPPADDNLSRQYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDALPCEQLSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHPNNESSDRIREGSSGLQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSQISKHSTSPNMEKSQVPKITLIHSQKDGQSITGQEKNKLCNSLLKRRKQKPSPPLSRENSNKESMEMSDDVNLKKLLKERKKRVNFIYGDSQIAELEFERLSKVKSKVDSMKRKLNEVQNCRAKGSTNEPSIIYVPTAQLREKG 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00267 707 MobiDBLite consensus disorder prediction 59 74 - -
Vian4g00267 707 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Vian4g00267 707 Gene3D - 490 557 - -
Vian4g00267 707 FunFam pathogenesis-related homeodomain protein 490 554 - -
Vian4g00267 707 SMART HOX_1 490 552 IPR001356 GO:0003677
Vian4g00267 707 MobiDBLite consensus disorder prediction 91 105 - -
Vian4g00267 707 MobiDBLite consensus disorder prediction 322 368 - -
Vian4g00267 707 SUPERFAMILY Homeodomain-like 491 554 IPR009057 -
Vian4g00267 707 MobiDBLite consensus disorder prediction 107 125 - -
Vian4g00267 707 Pfam PHD-finger 235 290 IPR019787 -
Vian4g00267 707 CDD homeodomain 496 543 IPR001356 GO:0003677
Vian4g00267 707 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Vian4g00267 707 Coils Coil 664 684 - -
Vian4g00267 707 MobiDBLite consensus disorder prediction 1 145 - -
Vian4g00267 707 MobiDBLite consensus disorder prediction 465 485 - -
Vian4g00267 707 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Vian4g00267 707 MobiDBLite consensus disorder prediction 606 632 - -
Vian4g00267 707 MobiDBLite consensus disorder prediction 34 57 - -
Vian4g00267 707 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Vian4g00267 707 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Vian4g00267 707 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 20 706 - -
Vian4g00267 707 SMART PHD_3 235 288 IPR001965 -
Vian4g00267 707 CDD PHD_PRHA_like 235 287 IPR045876 -
Vian4g00267 707 MobiDBLite consensus disorder prediction 10 33 - -
Vian4g00267 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Vian4g00267 707 MobiDBLite consensus disorder prediction 76 90 - -
Vian4g00267 707 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00267 Vian-Chr4 2846137 2850919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00267 135 553 Homeobox Transcription Factor Family AT4G29940 58.411 1.37e-156 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vian4g00267 PHD 8.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00267 - - gmx:100787118 1085.48