Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00253 ATGCAGGGTGACAAACTTGTAATTGGGTTACATGGCATTTGTACAGCTTCTGAAGCTGTTAACATGTTGAGTCTTAAACTAAAGATGGGTCTTGGTGGCATTAGAAGCTTACGAATCCACTTGCCAACAACTGGGAAGAAAAAACTAATCCCTGGCATATTTGCTGAGATGAGCAGACTACAGTTTCTAGAAATTTCTGTGGAAAATAGTGATGATTTGTTTGATCAAGTTTATGCCCTTGCTAAAGAGCTTCAATTTTTGGAAACTGAACTTAGATTTCTTTGTTGGTTGAATTATCCACTAAAGTCCTTGCCAGAGAATTTTTGTACTGATAAACTTGTAATATTGAAGTTACAATACGGGAGAATGGAAAAACTTTGGGACGGACTAAAGAATTTGGTGAATTTGAAAGAGCTTGACCTTATGCACTCCAAGAAATTAAAAAAGCTGCCAGATTTATCACAGGCAACAAATCTTGAAGAACTGGTCCTCTTGGGTTGTTCTATGTTGACTAGTATGGATTCCTCTATTTTCTCTCTGCCCAAACTCGAAAGTATTGACCTTTCGGGCTGCAAATCTCTAACCCTACTCACAAGCAATTCCCAATTTTGCAACTTCAGTTATCTGAATCTTGATTTTTGCAAGAATCTAAGGGAGTTTTCACTGATATCACAGAATATGAAAGAACTGAGATTAGGATTTACAAAGGTCAAAGTACTTCCTTCATCATTTGAATGCCACAGCAAGCTTAAATCGCTGCATCTAACAAGAAGTGACATTGAGATGTTACCTTCTTCCTTCAACAATCTGACTCAACTGCAACATCTAGACATAAACAATTGCAACAAGCTTCAAACAATACCAGAGCTTCCTCCGTCCCTTAAAACTCTAGAAGTCAGCAAATGCAAATCTCTTCAGAATCTGCGAAACCTTCCATCGTCTCTTAAAACTTTAAATGCCATTGAATGCAAATCATTGAAGACTGTATCGTTTCCTTCAACAGCTGATGAACAATTAACGGAAAACAAGAAACGGGTTTTGTTCTGGAATTGCAGGAACTTGGATGAAAGTTCTGCAGAGGCTATTGGGTTGAATGCAGAGATAAATCTCATGGAACTTGCAAACCAGCCTCTCCCTACACCAAGTCAAGAACATCAATTTTACAATGATTATGAGTATAATTATCATTCTTATCAAGGTATTTACGTGTACCCAGGAAGCAGTGTTCCAGCATGGTTCAAGCACACGGAAGCAAATGGTGATATAATAATCGATCTCTCTTCTGCTTCACCTTTCGAATTATTTGGATTCATTTTTTGCTTCGTCCTTAATAAGTTCCATGACACAGATATCATTGGCAGACTTGAATTTAACATCACTATAAGCGATGTTGATGATGTTGATGAAGGGAAAATGGGCAGTGTCAAAATCTACATAGATTGTTATTCAGATTGGTCAATTGCACCATATCACGTGTGTGTGATGTTCGACCAAAGATGTTCTTCCACCTTAAATAACATAGCCAGAAAACAAAAGAGATTTAAAATCAATGTTTCAGTAGGGGCACGAATCGAGTTTTATGATAATTATCATGAATTGCCACAGGAGGTTAGTGAGGCCATTAGAAGCATTCATTTGACATCTGATACTGCAATAACATCAACTAAGAAGCAAATGTTAAGTCCTCAAATATTTGCTATGAGAAAATTAAAATTTCTGGATATTTCTGGGGTAGATGAAAATGCTTACCACCAAGTTATTCTTGGTGAAGGAGCTAACTTTTTGGCCACTGAACTAAGATTTCTGAACTGGGAGAGATTCCCTATGAAGTCCTTGCCAGAGAGTTTTAATGCTGAAAAACTTGTTATATTGGATTTGATGATTGGAAGAATGACAAAGCTGTGGGATGGAGTGAAGAATCTAGCGAATTTAAAAAGACTTATTCTCTATTGCGCCATTAAGTTAAAGGAACTTCCAGATTTATCAGGAGCCATAAGACTTGAAGAACTGTACCTCAGTGGCTGTGATAGTTTGACAAGCCTGCATTCATCTATTTTCTCTCTGCCAAAACTTGAGATATTGGATCTTCATCACTGCATCTCCATTGCCATACTTCCAAGCAAGTTTGAGAAGAGGGTGTCTTCACTTTGGAGAAACAGTGAATTGAGGTGTCTAAACATGAGTAGTTGCGAGCAGCTTGAAACAATAGCAGATCTTCCCCCTTTCCTTAAAACTTTAAATGTCTCCTTCTGCTTATCACTAAAAACTCTACCCAAGCTTCCTCTTTCCCTTCAAATTCTAAATGTTTCCTTTTGCGAGTCACTTGAGAGTCTACCAGAGCTTCCCCCATTACTTTCAACTTTAAATGTCACCTCGTGCTATTCACTTCAAATTCCAACCAACCTTCCCTTGTCTCTTCAAATTGTAAACCTTTGTGACTGCAGCTTATTTCAGACTCTAGTTGAGCGTATTCGATCCGTTGAAACTAAAGATACCAAAAATTCCAGATTAGTACATCAAACTCTATCAAAGCTTCCCCTACCCTCAGAGATTTCGTGTTCCTGCAATTCAATCAAGACTGGAGCAGTGTCACTCTCGTCTTTCACCTCTCTGATTGAAGATTGTCTATCTTCCCTGAAATTTAAGACAGAAGAATAA 2658 0.3789 MQGDKLVIGLHGICTASEAVNMLSLKLKMGLGGIRSLRIHLPTTGKKKLIPGIFAEMSRLQFLEISVENSDDLFDQVYALAKELQFLETELRFLCWLNYPLKSLPENFCTDKLVILKLQYGRMEKLWDGLKNLVNLKELDLMHSKKLKKLPDLSQATNLEELVLLGCSMLTSMDSSIFSLPKLESIDLSGCKSLTLLTSNSQFCNFSYLNLDFCKNLREFSLISQNMKELRLGFTKVKVLPSSFECHSKLKSLHLTRSDIEMLPSSFNNLTQLQHLDINNCNKLQTIPELPPSLKTLEVSKCKSLQNLRNLPSSLKTLNAIECKSLKTVSFPSTADEQLTENKKRVLFWNCRNLDESSAEAIGLNAEINLMELANQPLPTPSQEHQFYNDYEYNYHSYQGIYVYPGSSVPAWFKHTEANGDIIIDLSSASPFELFGFIFCFVLNKFHDTDIIGRLEFNITISDVDDVDEGKMGSVKIYIDCYSDWSIAPYHVCVMFDQRCSSTLNNIARKQKRFKINVSVGARIEFYDNYHELPQEVSEAIRSIHLTSDTAITSTKKQMLSPQIFAMRKLKFLDISGVDENAYHQVILGEGANFLATELRFLNWERFPMKSLPESFNAEKLVILDLMIGRMTKLWDGVKNLANLKRLILYCAIKLKELPDLSGAIRLEELYLSGCDSLTSLHSSIFSLPKLEILDLHHCISIAILPSKFEKRVSSLWRNSELRCLNMSSCEQLETIADLPPFLKTLNVSFCLSLKTLPKLPLSLQILNVSFCESLESLPELPPLLSTLNVTSCYSLQIPTNLPLSLQIVNLCDCSLFQTLVERIRSVETKDTKNSRLVHQTLSKLPLPSEISCSCNSIKTGAVSLSSFTSLIEDCLSSLKFKTEE 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00253 885 Gene3D Ribonuclease Inhibitor 39 221 IPR032675 -
Vian4g00253 885 Gene3D Ribonuclease Inhibitor 529 709 IPR032675 -
Vian4g00253 885 Gene3D Ribonuclease Inhibitor 222 378 IPR032675 -
Vian4g00253 885 SUPERFAMILY L domain-like 47 357 - -
Vian4g00253 885 Gene3D Ribonuclease Inhibitor 710 885 IPR032675 -
Vian4g00253 885 SMART LRR_bac_2 761 781 - -
Vian4g00253 885 SMART LRR_bac_2 270 290 - -
Vian4g00253 885 SMART LRR_bac_2 291 314 - -
Vian4g00253 885 SMART LRR_bac_2 740 760 - -
Vian4g00253 885 SMART LRR_bac_2 641 661 - -
Vian4g00253 885 SUPERFAMILY L domain-like 558 880 - -
Vian4g00253 885 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 221 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00253 Vian-Chr4 2668602 2676096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00253 561 797 WRKY Transcription Factor Family AT4G12020 32.540 1.72e-19 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00253 - - var:108330977 667.537