Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00242 ATGTTGAATTTCTGTGGCTCTTATTCATTTATCCGGGTTTTGTTTTCCTTTGTCTCTTGGTTATTTGGAGGACTGAAAGGTGCAGAGGAAAAACCTACGACTGACAACAATGATCCTACGATTGACAACAATGATCCTAAGATCAAGCATGATGTTTTTGTTAGCTTCAGAGGCAAGGATGTCCATCGCGGCTTTCTTAGCCATTTGACTGAAGCTTTTCAAAGGAGAAACATAGATGCCTTTGTAGCTGATAACAATCTAGAGAAGGGAGAAGAAATATGGCCATCACTTGTTGAAGCAATTGAAGGATCATCCATTTCATTGGTCATATTCTCACAAAACTATGTTTCTTCTCGTTGGTGTTTAGAAGAACTCGTGACAATACTTGAATGTAGAGAGAAATATGGAACTAGTGTTTTACCTGTTTTCTACTATGTAGAACCCACATATGTACGACATCAATCCGAGGTGCAACGCTGGAGACGTGCTTTGAAATTGGCTTCTCGTTTAGCGGGAATTAACTCATCAAAATTTTCGGGTGATGCTGAACTAGTTAAGGAAATTGTCAATGAAGTGCTCAAGAGATTGGTTAAACAGTCAATTAACACAAAAGGGCTCGTTGGAATTGATGAAAAAATTGCAGCTATAGAATCACTGATGACAGAGGAGCCAAAGCAAACCAGACTTATTGGAATTTGGGGTATGGGAGGTATTGGCAAGACAACTCTTGCAGAAGAAGTATTTAATAAACTACAATCTGAATACGAAGGTTCCTATTTTGCAGCCAGTGAAACAGATCGATCAAACAAACACGAGCTAATTTCCTTGAAGGAAAAAATGTTTTCTAAGCTATTAGGATATGATGTCAAAATCGATACACCAAATTCATTGCCCAAAGGTATTGTCAGGAGAATTGGTTGTATGAAGGTTCTTATTGTTCTTGATGGTGTGAATGAGTCCGAACAGCTGGAAAAACTGCTGGGAACTCTCGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTAGAGATGAACAAGTGCTGAGGGCTAACAAAGCAGATAAGATATACCAGCTTAAAGAATTCAATTTTGACAAAGCCCTTGAACTTTTCCATTTGAATGCCTTTAAAACAAATGATCATGTGCAGGAATACAAAGAGCTTTCTAAAAGGGTGGTTGATTATGCCCAAGGCATTCCATTGGTTGTGAAAGTTTTGGCTGGTCTTCTTCATGGAAAAAATAAGGAAGAATGGGAAAGTATGTTGGGAAAGCTTAAGAAAATGCCTCCTAAAGAAGTTTATGAAGTAATGAAACTGAGTTATGATAGTCTAGATCGCAAAGGGAAACAAATATTTCTTGATCTTGCATGTTTCTTTCTCAGAACTCATGTAGCTGTGAATGTGGATTATCTGAAGTCTTTATTGAAAGATGATGACAGTGATAATTCTGTGGCTTTTGAGTTGGGAAGGTTGAAAGACAAAGCTCTCATAACTATATCTGATGATAATACTGTATCTATACATGATAGTTTACAAGAAATTGCGTGGGAGATTGTTCGCCAAGAGTCTGTTGAGCACCCTGGAAATCGCAGTCGGTTGTGGGAACTAAATGACATTTGTGAAGCATTGAAAAATGACAAGGTTAAAGAGGCTATTAGAAGTATAAGAGTTCACTTGCCAACAATTAAGGAGCAAAAGTTAGTGCCTCAAATTCTGGAAATTAATATGAGCAAACTAAAATTTCTGGAAGTTTTTGTATGTGATCGCTATGATGAACTTACTCTTCTTAAAGGGCCACAATTTTTGGCAACTGAGCTAAGATTTCTTTCTTGGTATCAATACCCTCTGAAATCATTGCCAGAGAATTTTTCTGCAGAGAAACTTGTAATATTGAAGTTGAGAAATGGCAGAATGGAAAAACTTTGGGATGGAGTGAAGAATATGGTGAATTTAAAACAAGTTGACCTTAGTCGATCACAAAATTTAAAGAAGCTACCAGATCTATCAAAAGCCACAAATCTAGAAGTCCTTCTTCTTATGAGTTGTTCTTCGTTGACTAGTGTTCATCCATCTATTTTCTCTCTGCCCAAACTTGTGAAATTGGACCTTCTTTGTTGCACATCTCTCACCACACTCGGTAGCAGTTCCTCTTCATGCAACCTCAGTTTTCTCAACCTTGGTAGGTGTACCAATCTAAGGAAATTCTTGCTGATATCAGAGAATATAAAAAAGCTTAGATTAGGGAACACCATGGTGAAAGAATTACCCTCATCCATCAGCAATTTTAATCAACTGCTACACCTTGACATAAGCTTTTGCAGCAAGCTTCGAACTATTCCAAAGCTTCCCTTATCACTTGAAACTCTGAATGCCAGAGAATGCCAATCTTTGAAGACTATATTGTTTCCTTCACCGGCTGTTGAACAATTAAAGGAGAACAGGAAAGGCATTCTGTTCTGGAAATGCACGAACTTGGATAATCAGACTCTGGTGGCTATTGGGTTGAATGTTCAAATGAATGTGATGAATTATGCAAACCAGCACATATCCACACCATGTCACAATCATGTTGAACATTGTGATGATGATAATTGTGATTCTTATTCAGGTGTTTATGTGTATCCAGGAAGTAGAGTTCCAAAGTGGTTGGAATATAAGACAAGAAAGGATTCTATAATTATTGATCTCTCTTCTGCTCCACCTTCCCTTCTCATTGGCTTTATTTTCTGCTTTGTTCTTGGTAAGTACCATAACACAGATGTTGATAGATTTGAAGTGATGATCACTATTGATGGCGAGGACGAAGGTAAAAATATCAGTGTTCCGATTTACATAGATTATGGCTATGAGAAAACTGAATCAGATCACGTGTGTGTGATGTATGAACAAAGATGTTCTACCTTCTTAAACAACAGAGCCAAAAACCAAACAAGGTTTAAAATCCAGGTTACAGTGGAAGAAGCACTCTCACACAAGTTTTTGAAAGGATTTGGCGTTAGCCTTATAAACCGCTCAACATATAAAAATTTCATTCAGGAAATGCAATTGCGAGAGTCACAGTATCAATTTCGACAAAGCCGCTGCTCCTCCCATTTATCAATAATTGAAAAACGCGTGGGGCCTCCATTACATTTATTCAGTGAAGCCTTCTTCCAATCCAACACCATACCCAGTTTCTCTTTGTTTGACAAATTGTATTTGTATTTGTTTGTCTCTTGTTCATTTCTCTGTGTCCTTTTCTTTTTCTCTCTGTTATTTCGAAAACTGAATGGTACAGAGAAAAATCCCATGTCAAACAACAACTCACCTCAAATAAACTATGATGTTTTTGTTAGCTTCAGGGGTGAAGATATCCGCGATGGGTTCCTTAGCCATTTGACTGAGGCTTTTGATGTGAAGAAAATAAATGCCTTCGTAGATGATAAGCTTGAGAAGGGGGAAGAACTATGGCCATCACTCGTCGAAGCAATTGAAGGATCATCCATTTCTTTGATCATATTCTCACCAGACTATGCTTCTTCTCCTTGGTGTTTGAAAGAACTTGTGAGCATACTTCAATGCAAAGAGAAATATGAGCAAACTGTCATACCTGTTTTCTACCATGTAAAACCTACAGATGTACGACATCAATCATCTGATGGTTACAGAAAAGCATTCGCTGACCATGAGAGAAAACATAACAATGAGGTTCAACTCTGGAGAGATGTCTTCGAAAAGTCTGCTTATTTATCTGGACTTGAGTCATCAAAATTTCGAAATGATGCTGACCTGCTAAAAGCAATAGTGGATCTTGTGCTGAGGAGGTTTGCGAAATCCCTGGTTAACTCAAAAGGGCTTGTTGGAATTGATAAAAGAATTGCAGATGTAGAATCATTGATACACAGAGAGTCAGAGAAAACCAGTCTAATTGGACTTTGGGGTATGGGTGGTATTGGCAAGACAACCCTTGCAGAAGAAGTATATAACAAACTACGGTCTAAATATGGAGGTTGTTATTTTTTGGTCAATGTAAGAGAACAGTTAAGCAGACACGGAAAAGATTGTTTGAGGAATGAAATTTTTTCTGCGCTGTTGTTAAGAGATGTGAAAATTGACACGCCAAATTCACTGCCAGAATATATTGTTAGGAGAATTCACCGAATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCACATAGGAGATCTTTTAGGAGCTCTTGACAATTTTGGATCAGGCAGTATCATAATTGTAACAACCAGAGATGAGCAAGTGCTTAAAGCTAATAAAGCTGATGAGATATACCATCTTAGAGAATTCACTTCGGATGAAGCTCTTGAACTTTTCAATCTGAATGCCTTTAACCAAAGTGTTCATCAAAGGCAGTACGATAAACTCTCAAAAAGGATTGTTCATTATGCCAAAGGCCTTCCACTAATTCTGAATGTTTTGGCTCATCGACTACATGGAAAGAATGAGGATGTATGGGAAAGTGAGCTAGACAAGCTTAAAAAAGTGCTTCCTACAAAAGTTTATGATGTTATAAAGCTGAGTTATGATGATTTAGATCGCAAAGAGAAACAGATTTTTCTTGATCTTGCATGTTTTCTTTGCATATCATCTGTGAAGATAACCACTGGCTATCTAAAATATTTACTGAAAGATGGTGAAAGAGATAATTCAGTGGTTGTTGCACTAGAAAGGCTTAAAGACAAAGCTCTTATAACATTTTCCAAAGATAATGTTGTAAGTATGCATGACAGTATAAAAGAAATGGCTTGGGAGATTGTTCGACAAGAGTCTCCTGAAGACCCTGGAAACCGCAGCCGGTTGTGGGATCCTGATGACATTTATGAAGCTTTTAAAAATGATAAGGTTAGTGAAGCCATCAGAAGCATACAAATTAACTTGTTAACACTGAAGGGGAAAAAGTTAGCGCCTCACATTCCTAAGATGAGCAGACTAAGGTTCGTGGAAATACATGGGGAAGAAGATGACCATGCTTACTACGGTAAATTTCGTGCTGAAGAGCAAGGGCTTCAATTTTCGGCAACTGAAATTAGATTTCTTTTTTGGAAATGTTACGCTCTAAAATCCTTGCCAGACATATTTTCTTTTGAAAAGATTGTGATATTGAAATTGGAATTGGGTAGAACGGAAAAACTTTGGGATGGAGTGCAGAATCTGGTGAATTTAAAAGAACTTGACCTCACAGGCTCACGTAGCTTGAAAGAGCTGCCAGATTTATCAAAAGCCAAATATATTGAAGTACTGTGCCTCGGGAGTTGTTCCGGATTAACCAGGTTACCTTCATCCTTCGCCAACCATACACAATTGCTATATCTAGACATAAGCCATTGCCCGGAAATTCTAACAATACCAGAGCTTCCTCTTTCCCTAGAAACTCTATATGCTGGAAGCTGCATATCGTTAAAGACTGTATTCTTCCATTCTACGGTAGTTGAACAATCAAAGAAAAACAGAAAGCAGGTTTCGTTCGACAATTGCATGAACTTGGATGAACCTTCTCTAGAGGCTATTTGGTTGAATGCACGAATCAACGTTATGAAATTTGCATACCAACACCTATCTGCGGCAAAGCAAGATGATTTTCAAAATTACAACGATTATGACAAGAATTATGATTCTTATCAAGCCTTTTACGGGTATCCAGGAAGCAGTGTTCCAGAATGGTTGGAGTACAAGTCAAGAAAATATTCTGTAATTATAGATCTCTCTTCTGCTCCACCTTCCCCTGTATATGGCTTCATTTTGTGCTTCGTACTCCTTGGAGAACTTGATAAGCTTAAAGTTAACATCGTTATAAGTGATTGTGAGGGTAAAGGTGTAATGGACAGAGTTAGAGTGAAACTAAATTGTAAGTTTAGGAATACTTTTGTGAATAAGTGGAGCTCTTTTGAATCGCAGAAAGTGGTTGTGATGTACGACCAAAAATGTTCCAACTTCCTAAACAACATAGCTAAGAGTCTCACAAGGTTTAAAATCATGGTTAGAACGGCGACTAAAGACGATGGCAGCTTTTATAGTAAGAGGATTATGGTTGGATTAAGTGGATTCGGGGTGAGCATAATAAGAACATCGACATATAGCAGTTACATGCAACAAATGGAATTGTGTGACTCAATGTACCACTTACGTTGA 6153 0.3772 MLNFCGSYSFIRVLFSFVSWLFGGLKGAEEKPTTDNNDPTIDNNDPKIKHDVFVSFRGKDVHRGFLSHLTEAFQRRNIDAFVADNNLEKGEEIWPSLVEAIEGSSISLVIFSQNYVSSRWCLEELVTILECREKYGTSVLPVFYYVEPTYVRHQSEVQRWRRALKLASRLAGINSSKFSGDAELVKEIVNEVLKRLVKQSINTKGLVGIDEKIAAIESLMTEEPKQTRLIGIWGMGGIGKTTLAEEVFNKLQSEYEGSYFAASETDRSNKHELISLKEKMFSKLLGYDVKIDTPNSLPKGIVRRIGCMKVLIVLDGVNESEQLEKLLGTLDNFGSGSRIIVTTRDEQVLRANKADKIYQLKEFNFDKALELFHLNAFKTNDHVQEYKELSKRVVDYAQGIPLVVKVLAGLLHGKNKEEWESMLGKLKKMPPKEVYEVMKLSYDSLDRKGKQIFLDLACFFLRTHVAVNVDYLKSLLKDDDSDNSVAFELGRLKDKALITISDDNTVSIHDSLQEIAWEIVRQESVEHPGNRSRLWELNDICEALKNDKVKEAIRSIRVHLPTIKEQKLVPQILEINMSKLKFLEVFVCDRYDELTLLKGPQFLATELRFLSWYQYPLKSLPENFSAEKLVILKLRNGRMEKLWDGVKNMVNLKQVDLSRSQNLKKLPDLSKATNLEVLLLMSCSSLTSVHPSIFSLPKLVKLDLLCCTSLTTLGSSSSSCNLSFLNLGRCTNLRKFLLISENIKKLRLGNTMVKELPSSISNFNQLLHLDISFCSKLRTIPKLPLSLETLNARECQSLKTILFPSPAVEQLKENRKGILFWKCTNLDNQTLVAIGLNVQMNVMNYANQHISTPCHNHVEHCDDDNCDSYSGVYVYPGSRVPKWLEYKTRKDSIIIDLSSAPPSLLIGFIFCFVLGKYHNTDVDRFEVMITIDGEDEGKNISVPIYIDYGYEKTESDHVCVMYEQRCSTFLNNRAKNQTRFKIQVTVEEALSHKFLKGFGVSLINRSTYKNFIQEMQLRESQYQFRQSRCSSHLSIIEKRVGPPLHLFSEAFFQSNTIPSFSLFDKLYLYLFVSCSFLCVLFFFSLLFRKLNGTEKNPMSNNNSPQINYDVFVSFRGEDIRDGFLSHLTEAFDVKKINAFVDDKLEKGEELWPSLVEAIEGSSISLIIFSPDYASSPWCLKELVSILQCKEKYEQTVIPVFYHVKPTDVRHQSSDGYRKAFADHERKHNNEVQLWRDVFEKSAYLSGLESSKFRNDADLLKAIVDLVLRRFAKSLVNSKGLVGIDKRIADVESLIHRESEKTSLIGLWGMGGIGKTTLAEEVYNKLRSKYGGCYFLVNVREQLSRHGKDCLRNEIFSALLLRDVKIDTPNSLPEYIVRRIHRMKVLIVLDDVNDSDHIGDLLGALDNFGSGSIIIVTTRDEQVLKANKADEIYHLREFTSDEALELFNLNAFNQSVHQRQYDKLSKRIVHYAKGLPLILNVLAHRLHGKNEDVWESELDKLKKVLPTKVYDVIKLSYDDLDRKEKQIFLDLACFLCISSVKITTGYLKYLLKDGERDNSVVVALERLKDKALITFSKDNVVSMHDSIKEMAWEIVRQESPEDPGNRSRLWDPDDIYEAFKNDKVSEAIRSIQINLLTLKGKKLAPHIPKMSRLRFVEIHGEEDDHAYYGKFRAEEQGLQFSATEIRFLFWKCYALKSLPDIFSFEKIVILKLELGRTEKLWDGVQNLVNLKELDLTGSRSLKELPDLSKAKYIEVLCLGSCSGLTRLPSSFANHTQLLYLDISHCPEILTIPELPLSLETLYAGSCISLKTVFFHSTVVEQSKKNRKQVSFDNCMNLDEPSLEAIWLNARINVMKFAYQHLSAAKQDDFQNYNDYDKNYDSYQAFYGYPGSSVPEWLEYKSRKYSVIIDLSSAPPSPVYGFILCFVLLGELDKLKVNIVISDCEGKGVMDRVRVKLNCKFRNTFVNKWSSFESQKVVVMYDQKCSNFLNNIAKSLTRFKIMVRTATKDDGSFYSKRIMVGLSGFGVSIIRTSTYSSYMQQMELCDSMYHLR 2050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00242 2050 SMART AAA_5 226 364 IPR003593 GO:0016887
Vian4g00242 2050 SMART AAA_5 1300 1449 IPR003593 GO:0016887
Vian4g00242 2050 SMART till_3 1107 1244 IPR000157 GO:0007165
Vian4g00242 2050 SMART till_3 49 170 IPR000157 GO:0007165
Vian4g00242 2050 Pfam NB-ARC domain 1292 1503 IPR002182 GO:0043531
Vian4g00242 2050 Pfam NB-ARC domain 214 443 IPR002182 GO:0043531
Vian4g00242 2050 Gene3D - 363 445 IPR042197 -
Vian4g00242 2050 Gene3D - 1437 1520 IPR042197 -
Vian4g00242 2050 ProSiteProfiles TIR domain profile. 48 196 IPR000157 GO:0007165
Vian4g00242 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 456 IPR027417 -
Vian4g00242 2050 ProSiteProfiles TIR domain profile. 1106 1270 IPR000157 GO:0007165
Vian4g00242 2050 PRINTS Disease resistance protein signature 1378 1392 - -
Vian4g00242 2050 PRINTS Disease resistance protein signature 1303 1318 - -
Vian4g00242 2050 PRINTS Disease resistance protein signature 1724 1740 - -
Vian4g00242 2050 PRINTS Disease resistance protein signature 1471 1485 - -
Vian4g00242 2050 FunFam Disease resistance protein (TIR-NBS-LRR class) 1104 1272 - -
Vian4g00242 2050 Gene3D - 1102 1273 IPR035897 -
Vian4g00242 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1272 1530 IPR027417 -
Vian4g00242 2050 Gene3D - 1274 1431 IPR027417 -
Vian4g00242 2050 SUPERFAMILY Toll/Interleukin receptor TIR domain 1099 1242 IPR035897 -
Vian4g00242 2050 SUPERFAMILY L domain-like 1582 1810 - -
Vian4g00242 2050 Gene3D - 44 197 IPR035897 -
Vian4g00242 2050 Gene3D Ribonuclease Inhibitor 1628 1829 IPR032675 -
Vian4g00242 2050 Pfam TIR domain 49 199 IPR000157 GO:0007165
Vian4g00242 2050 Pfam TIR domain 1107 1267 IPR000157 GO:0007165
Vian4g00242 2050 SUPERFAMILY L domain-like 522 813 - -
Vian4g00242 2050 Gene3D Ribonuclease Inhibitor 446 865 IPR032675 -
Vian4g00242 2050 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 172 IPR035897 -
Vian4g00242 2050 FunFam Disease resistance protein (TIR-NBS-LRR class) 46 198 - -
Vian4g00242 2050 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 50 797 IPR044974 GO:0006952
Vian4g00242 2050 Gene3D - 198 359 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00242 Vian-Chr4 2522014 2529772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00242 50 804 WRKY Transcription Factor Family AT4G12020 33.504 1.10e-92 333