Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00238 ATGGAGTGGGACAGCAATTCTGATCTCAGCGGCGACGACGACGCCGCTTCCTTCCTCCTCAACGACGACGATGACGACGTCGTCGGGCCCCTCCCCTTTCCCATCCTCCAAACCGCCCCCTGCGGCTTCGTCGTCACCGATGCGCTCGAGCCCGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGGTCACTGGCTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGCCGATTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAGATTAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGTCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACGATTAAGGAATCTACAAAATCATCAGATCGGTTTCAATCTGTGCTTTCCTCATTGAATCCTCTTCCAGTAGGGGACCGAAATGTTACTCGTGGACTTTGTGGGATATTGCAGTTAAGTGATGAGGTATTGTCTCTCAAGATACTTTCTCGCTTAACCCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCGATTGTATGAGCTAACAAAAAATGAAGATCTTTGGAGAATGGTGTGTCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACCCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGATGTAATTTTAGTGCTTGTGCAGTTGGTAATAGGGTTGTCTTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTGAATTCAAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGATTCTCGTTTGGTTGTATTTGGAGGATGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACATGGCGTGAAATCTCTGGACTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGCGCTGACTCTGGTGTACTCTTGAGTGATACTTTCCTTCTTGATCTTTCAATGGAGAAGCCTGTCTGGAGAGAGATACCAGTAGCATGGACTCCACCTTCGCGACTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGATTTCGCTCTAGTGATGTATTCACAATGGATTTAAGTGAGGAGGAGCCATGTTGGAGGTGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCAGGAGGCATAGCTCCCCCTCCTAGACTTGATCATGTGGCTGTGACCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGACCCGACTGACGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGTCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAAGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCAAGTTCTGTCATCTAA 1839 0.485 MEWDSNSDLSGDDDAASFLLNDDDDDVVGPLPFPILQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTIKESTKSSDRFQSVLSSLNPLPVGDRNVTRGLCGILQLSDEVLSLKILSRLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNDSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVTLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00238 612 CDD PAS 39 141 IPR000014 -
Vian4g00238 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Vian4g00238 612 NCBIfam PAS domain S-box protein 35 148 IPR000014 -
Vian4g00238 612 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Vian4g00238 612 FunFam Putative LOV domain-containing protein 273 477 - -
Vian4g00238 612 FunFam Adagio protein 1 197 244 - -
Vian4g00238 612 Gene3D - 198 284 - -
Vian4g00238 612 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Vian4g00238 612 Gene3D PAS domain 33 160 - -
Vian4g00238 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Vian4g00238 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 609 - -
Vian4g00238 612 Pfam Galactose oxidase, central domain 359 407 - -
Vian4g00238 612 FunFam Putative LOV domain-containing protein 478 611 - -
Vian4g00238 612 Pfam PAS domain 40 149 IPR000014 -
Vian4g00238 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Vian4g00238 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Vian4g00238 612 Gene3D - 428 611 IPR015915 GO:0005515
Vian4g00238 612 Gene3D - 285 427 IPR015915 GO:0005515
Vian4g00238 612 Pfam Galactose oxidase, central domain 296 346 - -
Vian4g00238 612 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Vian4g00238 612 CDD F-box_AtADO-like 199 245 - -
Vian4g00238 612 FunFam Adagio protein 1 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00238 Vian-Chr4 2435961 2445541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00238 36 243 AGC Kinase Gene Family AT5G58140 26.582 5.40e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00238 K12115 - gmx:100802828 1189.48