Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00236 ATGAGTTTTCGATTTCCTCCTCCTTCTGACGATTTTAACGATTTTCAGACTCAAGCGCAAAACGAGTTTGACCATTTTATGGAATGGACAGTAATAGCGTCTATTGCTTCTGGAGTGGTGGGACTCGTAGCTATTATAGCAATAGTATATGCCATAATTCAATGCTTAAAGAAGGCAGGAGATGCAATTCCCGCATACGCCCAGCTTGGTAGCACAGAGAATGATCATAAAGCATCAAATTCATTTCCTTCAACCAGAGAAATGGAAGTAGTAATAGAACCAGCTTCTACAGTTCAAAATTCGAAAACTGAGTTTGCAACGATGGAAAGATTCCTGAGCAACATCACCAAGGAGAAACCCATCAGATTCTCTCCTGAGGAACTGGATATAATTACATGGAACTACTCAACCATATTGGGTTCAGGTGCTTTTGGGGTTGTCTACAAAGGAATATTGTCCAATGGAGAAGATGTGGCTGTCAAAGTAATCAACAGTTTGGACATGGAAATGGAAGAGCAACTAAAAGCAGAAGTTGGAACCCTAGGAAGAACATACCATGTCAATCTGGTGAGGCTTTATGGCTTCTGCTTCCACCGTGACAAGAGAGCTCTTGTTTATGAGTATGTAGAAAATGGGTCTTTGGACAAGCACTTGTTTGGCAGCAAGAATCAAGACATTGAGTTGGGAAAGCTTCTTGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAAGAGTGTCAAAAGAGAATAATTCATTATGATATTAAACCAGAGAATGTTCTTCTTGACATGAAGTTGGAACCAAAGGTTGCAGATTTTGGCCTAGCTAAGCTTTGCAGCAGAGAAAATAACGTTTCAGTAAACACACACTTTAGAGGAACAAGGGGATATGCTGCACCAGAAATGTGGAAGCCTTTTCCAGTGACTCACAAGTGTGACGTTTATAGTTTTGGTATTCTCCTGTTTGAAATGGTTGGGAGGAGAAGGCATTTTGATGATAACTACAGAGAATCACAACAGTGGCTTCCACAATGGACATGGGATATGTTTGAGAATAATGAGTTATCTGTGATGCTTTCATTTTGTGGAATTGAGGAGAAAGACAAGGAGAAAGGTGAGAGAATGTCAAAGGTGGCTCTGTGGTGTGTTCAGTATTCACCTGATGATAGACCTCTTATGAGTACTGTGGTGAAGATGCTTGAGGGTGAAATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGTGTCTGTTAAGCCAAACCTCACTCAAAAAGAAAGTAGTACTGAAGATTCAGATGCTACCCAGTCATGGGAAACAACTTCAAACCCGGAATATGGCTCCAAAATCAAGCGCAATACATTTGAGATCGAAGAACTTCCTTAG 1398 0.4049 MSFRFPPPSDDFNDFQTQAQNEFDHFMEWTVIASIASGVVGLVAIIAIVYAIIQCLKKAGDAIPAYAQLGSTENDHKASNSFPSTREMEVVIEPASTVQNSKTEFATMERFLSNITKEKPIRFSPEELDIITWNYSTILGSGAFGVVYKGILSNGEDVAVKVINSLDMEMEEQLKAEVGTLGRTYHVNLVRLYGFCFHRDKRALVYEYVENGSLDKHLFGSKNQDIELGKLLEIAIGTAKGIAYLHEECQKRIIHYDIKPENVLLDMKLEPKVADFGLAKLCSRENNVSVNTHFRGTRGYAAPEMWKPFPVTHKCDVYSFGILLFEMVGRRRHFDDNYRESQQWLPQWTWDMFENNELSVMLSFCGIEEKDKEKGERMSKVALWCVQYSPDDRPLMSTVVKMLEGEIEISPPPFPFQNLVSVKPNLTQKESSTEDSDATQSWETTSNPEYGSKIKRNTFEIEELP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00236 465 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
Vian4g00236 465 ProSiteProfiles Protein kinase domain profile. 133 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00236 465 Gene3D Phosphorylase Kinase; domain 1 94 208 - -
Vian4g00236 465 Gene3D Transferase(Phosphotransferase) domain 1 209 410 - -
Vian4g00236 465 MobiDBLite consensus disorder prediction 425 453 - -
Vian4g00236 465 SMART serkin_6 133 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00236 465 MobiDBLite consensus disorder prediction 425 457 - -
Vian4g00236 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vian4g00236 465 Pfam Protein kinase domain 136 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00236 465 SUPERFAMILY Protein kinase-like (PK-like) 115 404 IPR011009 -
Vian4g00236 465 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 27 414 - -
Vian4g00236 465 FunFam Putative receptor-like protein kinase 209 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00236 Vian-Chr4 2423280 2425205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00236 122 453 Receptor kinase-like Gene Family AT5G38280 39.589 5.35e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vian4g00236 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00236 - - aprc:113852543 721.465