Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00235 ATGTCCGACACCTCCTATACCTCGACTCCCACCAACCATTCTGACTTTCCGGCGGGAATTGTAATTCCCATTATAATAGTTGTCATTATTGTGAAGATTGGTATTTGCTTTTGGGTATTTGGTGAATGCAAAAAAAGATATCAGGTCAATGGTGGTTTTAAACAAACAGGAACACCAGATAAACAATTTATGACACTCACTATGGATAAATTTCTAAATGATATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAGCAGCTAAGGATTGCAACTGATAATTACTCTTATCACTTGGGGTCAGGAGGTTTTGGGTCTGTTTATAAAGGAAGTTTTAGTAATGGAACCATTATAGCTGTGAAAGTTCTACTTGGGAGTTCTGACAAAAGAATTGATGAACAGTTTATGGCAGAAGTGGGTACCATTGGTAAAGTTCATCATTTCAATCTAGTTCGTCTATATGGGTTTTGCTTCGAAAGACACTTGAGAGCACTGGTTTACGAGTACATGGTGAATGGCCCGCTTGAGAAGTACCTATTTCATGAAAGCACCTTCTTATCATTCGAAAAGCTCCATGAGATCGCAATTGGTACAGCAAGAGGGATTGCTTACTTGCATGAAGAGTGCCAACAGAGAATAATCCACTATGATATCAAACCAGGAAATATTCTCTTGGATAGGAACTTTTGTCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGACCATACTCATATAACCATGACTGGGGGTAGGGGCACTCCTGGTTATGCTGCACCTGAACTTTGGTTGCCTTTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGCATGCTGTTATTTGAAATCATTGGCAGAAGGAAAAACCATAACATTAACCTTCCAGAAAGTCAGGTTTGGTTTCCAATGTGGGCTTGGGAAAAATTTGCTGCTGAAAAAGTGGAGGAGTTGATAACTTCTTGTGGGATAGACGACAAAGATAGGGAGATTGCAGAAAGAATTGTTAAAGTAGCTTTGTCATGTGTGCAGTATAGGCCAGAAGCAAGACCTATAATGAGTGTTGTAGTGAAAATGTTGGAAGGTTCTGTTGAAGTTCCAAACCCTCCAAACCCATTTCAGTACCTGATTGGTTGGGTTCCACCAACTCCTGATACTGACACAAATATCAGTTCTGACTCGTCGGCATTGGTAACCAAATCTGTCCCTGTACTTGCCACACATGCTATCACCACCGACGAGATTGAATTAGCGTCTGTATAA 1272 0.4072 MSDTSYTSTPTNHSDFPAGIVIPIIIVVIIVKIGICFWVFGECKKRYQVNGGFKQTGTPDKQFMTLTMDKFLNDMEREKPIRFTDQQLRIATDNYSYHLGSGGFGSVYKGSFSNGTIIAVKVLLGSSDKRIDEQFMAEVGTIGKVHHFNLVRLYGFCFERHLRALVYEYMVNGPLEKYLFHESTFLSFEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFCPKVADFGLAKLCNRDHTHITMTGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEIIGRRKNHNINLPESQVWFPMWAWEKFAAEKVEELITSCGIDDKDREIAERIVKVALSCVQYRPEARPIMSVVVKMLEGSVEVPNPPNPFQYLIGWVPPTPDTDTNISSDSSALVTKSVPVLATHAITTDEIELASV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00235 423 SUPERFAMILY Protein kinase-like (PK-like) 76 364 IPR011009 -
Vian4g00235 423 FunFam serine/threonine-protein kinase PBS1-like 64 169 - -
Vian4g00235 423 Gene3D Transferase(Phosphotransferase) domain 1 170 371 - -
Vian4g00235 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vian4g00235 423 FunFam Putative receptor-like protein kinase 170 371 - -
Vian4g00235 423 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00235 423 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Vian4g00235 423 Pfam Protein tyrosine and serine/threonine kinase 97 363 IPR001245 GO:0004672|GO:0006468
Vian4g00235 423 SMART serkin_6 93 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00235 423 PANTHER OS07G0415500 PROTEIN 19 376 - -
Vian4g00235 423 Gene3D Phosphorylase Kinase; domain 1 67 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00235 Vian-Chr4 2412765 2414126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00235 82 378 Receptor kinase-like Gene Family AT5G38280 41.311 8.06e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vian4g00235 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00235 - - gmx:100305451 642.114