Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00233 ATGGCAGAAAATATTAAGAGAAGCAGCTTCGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCACTGGTTGAAAGAATTGTGAAGCCTCTTCATGGCGTCAAACATGTCACTGTGATAGTCCCTACACGAACAGTCACTGTTGTCCATGATGTTCTCTTCATTTCTGACTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCTAGTTTGAGACTGCAGGGAGAGACTGATAATGAAAAGAAATGGCCAGATTTAACTACAATGGTGTGTGGCTTGTTTCTGGCACTTTCTTTCTTGAAATATATATATCACCCTTTGGAATGGTTGGCACTTGTTTCTGTTGTCATTGGCTTCCCTAAGGTTCTACTAAGGGCCATTGCATCTATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGGCAGTGTGTAGTACTGCTGCTTTACAAGATTTTTGGGAGGCTGGTGTCATCATCTTCTTATTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAAAGGTTGCGATGTCTTCTTTGACTAGCATGGCTCCTCAAAAAGCTGTTATTGCTGAAACTGGGGAACGTGTTGACGTGAATGATGTTAAGATCAACACCATACTTGCAGTCAAGTCGGGTGATGCTATTCCTCTTGATGGAATAGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTACCTGTGATAAAAGAGTTTGATTCAGTAGTGTTGGCTGGAACCATTAATGTGAATGGATATATAAGTGTGAAAACTACAGTGCTGGCAAAAGACACAGTGGTGGCTAGAATGTCAAAACTTGTTGAAGAGGCCTCTAGCAGAAAATCTCGAACACAAAGATTCATTGATAATTTCGCCAAGTACTATATTCCTGCTAGCATTGCTGTGGTTCCAGCTGCATTAGAGGTTCCTGATATAAAACCTTGGTTTCATCTTGCAATTGTGGTTTTGTTAAGTGCATGTCCTTGTGCTCTCATCCTCTCCACTCCCGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAACAAGTGGGTTACTACTGAAAGGTGGAGATTATATTGAAACACTGTCTGGAATTAAGACAGTGGCTTTTGATAAAACTGGCACAATAACAAGGGGAGAATTCACAGTGGCAGATTTTTCTGTTATAGATGACATTAGCATTGAAACTTTACTGTACTGGGTTTCAAGTATCGAGAGTAAATCAAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTCTAATTCTGTCAAGCCAATCCCTGAAAATGTTGAGAATTTTGAAAATTTTGCTGGTGAAGGAGTTTTTGGTACAATTGATGGGAAGAATATCTATATTGGCAATAGAAGAATCGGTGCTAGGGCTGACTCCGAAAGAGTTGATTGTCAGTTGCAATTTCAAAGCCATGAAATTTCTACCCCGAAACGATACTGTGGGCCGACTCTGGTTGGAGTCTTCAGCTTAGTCGATACTTGCAGATCAGGTGCTTTGGAAGCAATAGAAGAGCTGAAGTTGTTAGGCGTGAGATCTGTCATGCTAACAGGAGATAGCACTCAAGCAGCTTTGTATGTTCAAAGTCAGTTGAACCATGCTCTAGACATTGTACACGCAGAGCTTCTACCTGCAGAAAAGGCAGTGATCATTGAGAATTTGAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATAAATGATGCTCCTGCATTGGCCACAGCTGACATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTTGCAAATGAGACAGGCAATGCAATTCTTATGTCGAACGACATCCAAAAGATACCTGAAGCCATTCGGCTTGCAAGGAAAACCACTAGAAAGCTCATTGAGAATGTCATTATTTCAGTTGGCTTCAAGAGTGCTATACTTGCATTGGCAATTGCAGGATACCCTATTGTTTGGCTTGCTGTCTTGACTGACGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGAGAAACCAAAACATGAAAGAAAATCTGCAAGTTCTAAATATGGCACCTTCTCGGAAGATCTGACCATGACTCTACTGGACAATGAAAGTAATAACATTAAGAATCAAGGGCTTCTTACCGGTGAAAAATGTGGTAAAGATTGTTGTAAAGACGACACTTATCATGTAGAAACTACAAGCAAGAACGAATCTTCTGGACTTTTGAAGTTGAGCAAGAGAAACCAAAGTGGAAACTCTGTCTCTATTGAGGTGCATATAGTGAAACCTTGCAATGGTTGTTGTCTAAGAAAGGTAAAAACATTTGACGACTCTGCATGCAGAACAAATAATGGTTCTGGTTGTTGCCAAGAGCAATCTAAGACTGAACAATGTGTCACTGGCTCTGATGCCAGAGAAGATGCCAGCATTGCTTCCTTGGAGTCTTATTGCCTTAAGGACAAATCAGAGGATATTCAAGACTTGTCTGAGACAGAAGGGATTCCAAAGGGCTGCAATAAGACATGCTGCAATGATAGTTTTAAAAATATGACTAGCCTTAGCCAGCCAGAAATTATTATAGAGTGA 2622 0.4085 MAENIKRSSFEVLGMCCATEAALVERIVKPLHGVKHVTVIVPTRTVTVVHDVLFISDSQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLFLALSFLKYIYHPLEWLALVSVVIGFPKVLLRAIASIKALTLNINILVLLAVCSTAALQDFWEAGVIIFLFSIAQWLETRATHKAKVAMSSLTSMAPQKAVIAETGERVDVNDVKINTILAVKSGDAIPLDGIVVEGKCEVDEKMLTGESLPVIKEFDSVVLAGTINVNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPASIAVVPAALEVPDIKPWFHLAIVVLLSACPCALILSTPVAIFCALTKAATSGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVADFSVIDDISIETLLYWVSSIESKSSHPMAAALVEYGMSNSVKPIPENVENFENFAGEGVFGTIDGKNIYIGNRRIGARADSERVDCQLQFQSHEISTPKRYCGPTLVGVFSLVDTCRSGALEAIEELKLLGVRSVMLTGDSTQAALYVQSQLNHALDIVHAELLPAEKAVIIENLKKDGLTAMIGDGINDAPALATADIGISMGISGSALANETGNAILMSNDIQKIPEAIRLARKTTRKLIENVIISVGFKSAILALAIAGYPIVWLAVLTDVGTCLLVILNSMLILQEKPKHERKSASSKYGTFSEDLTMTLLDNESNNIKNQGLLTGEKCGKDCCKDDTYHVETTSKNESSGLLKLSKRNQSGNSVSIEVHIVKPCNGCCLRKVKTFDDSACRTNNGSGCCQEQSKTEQCVTGSDAREDASIASLESYCLKDKSEDIQDLSETEGIPKGCNKTCCNDSFKNMTSLSQPEIIIE 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00233 873 PRINTS P-type cation-transporting ATPase superfamily signature 527 537 - -
Vian4g00233 873 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Vian4g00233 873 PRINTS P-type cation-transporting ATPase superfamily signature 605 617 - -
Vian4g00233 873 PRINTS P-type cation-transporting ATPase superfamily signature 505 516 - -
Vian4g00233 873 PRINTS P-type cation-transporting ATPase superfamily signature 581 600 - -
Vian4g00233 873 PRINTS P-type cation-transporting ATPase superfamily signature 382 396 - -
Vian4g00233 873 Gene3D - 393 513 IPR023299 GO:0000166
Vian4g00233 873 CDD P-type_ATPase_HM 90 683 - -
Vian4g00233 873 SFLD p-type atpase 365 634 IPR044492 -
Vian4g00233 873 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Vian4g00233 873 Gene3D - 373 632 IPR023214 -
Vian4g00233 873 SUPERFAMILY HMA, heavy metal-associated domain 3 73 IPR036163 GO:0046872
Vian4g00233 873 CDD HMA 10 72 IPR006121 GO:0046872
Vian4g00233 873 Pfam haloacid dehalogenase-like hydrolase 378 595 - -
Vian4g00233 873 SUPERFAMILY HAD-like 380 682 IPR036412 -
Vian4g00233 873 NCBIfam HAD-IC family P-type ATPase 161 662 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00233 873 SFLD C1.7: P-type atpase like 365 634 - -
Vian4g00233 873 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 376 IPR023298 -
Vian4g00233 873 FunFam Putative cadmium/zinc-transporting ATPase 3 393 513 - -
Vian4g00233 873 ProSitePatterns E1-E2 ATPases phosphorylation site. 384 390 IPR018303 -
Vian4g00233 873 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 688 - -
Vian4g00233 873 FunFam Putative cadmium/zinc-transporting ATPase 3 2 75 - -
Vian4g00233 873 Gene3D - 2 75 - -
Vian4g00233 873 Gene3D - 177 291 - -
Vian4g00233 873 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00233 873 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00233 873 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00233 873 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00233 873 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00233 873 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Vian4g00233 873 Pfam E1-E2 ATPase 198 360 - -
Vian4g00233 873 ProSitePatterns Hypothetical cof family signature 2. 581 603 - -
Vian4g00233 873 NCBIfam heavy metal translocating P-type ATPase 139 683 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00233 873 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00233 Vian-Chr4 2393119 2398280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00233 2 806 Primary Pumps ATPases AT4G30110 53.406 0.0 851