Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00232 ATGAAGTATATACGGAGCAACAGCTTGAAGAGGCTTTTCTCGTTTGGAAAACGCGGGTTTGGGGAAGAAAACAATGTTGGGTTGGTGGCTCCTTCATGTGAAGAGCACCCTCTAAGACCCTCTTGGAAATGCTTCTCCTTTGAAGAGTTGTTCGATGCCACCAATGGTTTTAGCTCAGGGAATTTGGTTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGATGAGAACTTGCCTCCTTTAGATTGGAGGACAAGGTACAAGATAGCTCTTGGGACCGCACGTGGTCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACGTTTTGTTAACAGCAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAGGCATTTGGCACCAGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAATCCTCTCTGGAAGGAAACCAGTGGATGGATCTCACCAAAGCGTGCACAGCTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTGTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTGGTGGAGGTAATGGAGAAGTGGGAAATAGATAAAGAGAAGTGGGAAATGGCAGAGGAGAAGGAGCAAAAGGTGGAGCTATGGGGTTTTGATGATCTGGAATATGCACATGACACTTCCTTTTCAATGTCTCCACCTGACTCAGTTGCAAGTACTTAG 861 0.4599 MKYIRSNSLKRLFSFGKRGFGEENNVGLVAPSCEEHPLRPSWKCFSFEELFDATNGFSSGNLVGRGGYAEVYKGTLRGDENLPPLDWRTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNVLLTADFEPKISDFGLARHLAPEYYMHGVVDEKTDVFAFGVFLLEILSGRKPVDGSHQSVHSWAKPILNKGEIEKVVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPTMSEVVEVMEKWEIDKEKWEMAEEKEQKVELWGFDDLEYAHDTSFSMSPPDSVAST 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00232 286 SMART serkin_6 57 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00232 286 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00232 286 FunFam Os07g0541700 protein 73 150 - -
Vian4g00232 286 Gene3D Transferase(Phosphotransferase) domain 1 79 266 - -
Vian4g00232 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Vian4g00232 286 SUPERFAMILY Protein kinase-like (PK-like) 39 241 IPR011009 -
Vian4g00232 286 PANTHER OS08G0249100 PROTEIN 34 79 IPR046958 -
Vian4g00232 286 Pfam Protein tyrosine and serine/threonine kinase 84 237 IPR001245 GO:0004672|GO:0006468
Vian4g00232 286 Gene3D Phosphorylase Kinase; domain 1 31 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00232 Vian-Chr4 2385692 2389273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00232 45 244 Receptor kinase-like Gene Family AT4G23280 37.083 5.72e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian4g00232 PK_Tyr_Ser-Thr 3.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00232 - - csat:109130913 383.259