Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00208 ATGGAGAAAGAGAGATCAAAAGAGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCATGGGGTAAGTTTGGAGCAGAGATCAGAGATCCGACAAAACCTACGGGAAGACAATGGTTGGGAACGTTTGACACTGCAGAAGAAGCAGCAAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCCATCCTTAATTTCCCCGATGAGTATTACTCTCATCTTCCTTTTCTACTGTCGTCAAATTCTTCTACTGTTGACAGTGGAAGTTCTTTTGCCCGAAAGTCATCATCATCGTCTTCTTCTGCCAGTGTCATTGGAAGTTCTTCTACTGCACAAGGTGAAGTTATTGAGTTTGAGTATTTGGATGACAAGGTATTGGAAGACCTTCTTGAGTCAGAGGAGAAGCGAAAGAAGAAAGAGTAA 432 0.4375 MEKERSKEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFLLSSNSSTVDSGSSFARKSSSSSSSASVIGSSSTAQGEVIEFEYLDDKVLEDLLESEEKRKKKE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00208 143 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Vian4g00208 143 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vian4g00208 143 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vian4g00208 143 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vian4g00208 143 PANTHER DNA-BINDING DOMAIN 4 139 IPR044808 GO:0003700|GO:0009873
Vian4g00208 143 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Vian4g00208 143 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Vian4g00208 143 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vian4g00208 143 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vian4g00208 143 MobiDBLite consensus disorder prediction 85 113 - -
Vian4g00208 143 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00208 Vian-Chr4 1944752 1949097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00208 8 140 AP2-EREBP Transcription Factor Family AT3G23230 56.391 4.57e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g00208 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00208 - - vra:106779050 181.8