Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00202 ATGGTATTCTCAACTGCTTTTCTCCACGAAGGGGGCCCCTTTTTTTCTAGAAAAAGGCCAAGGGCATTAGATCTTGGACATCAAAATATAGATTTACATGCAGATGCAGAAAGGTGCATTAGTACTGGTGATGTTCCCTCTTCCAGTAACACTGACGATAAAGTTGACCCAGATTCTGGAATGGAGATGAGCTGTCCATCAAATGTTAACAATGGCTATGTTCCTGTGTGTTCTACCACAGGGAATATATCCCACATGGACCAGAGTTTATGTGGCTATGTGCAACAGCCTGCTCTAGTGAGTGGATGGATGTATGTGAATGAAAGTGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATACGAAGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCATTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATGGGTATCTCAGGCACTAGGATGCCTACAACGGCAGTATATGAACAAGGTAGATCTTTTGAGGCTGTTCCTCTGGCTAGTAACCCAGATTCGGAATCTGTGTCACATTCACAAGTTAATTATTGCAGTAAGGAATCCAATCACTTAAATCCACACTCAGAGCCATTCAACAGTTTAATATCTTGTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCCCATTCTATCAGTGAATTGATTTCTTGGCACAGTCACGGATATCTTAAAGATTCAGCAGTGATCTTTCATTCTGATAAGAAGTATGACACCTTTGTGCTATTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTAAAATTAATGAGGTTGACGATATGGTGGAGTTGATTAGTGAGATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGAGATATTATTGCTGAGTATGTTACAGATAAGAAATGTAAGAGGCAAAAGCTTGAATCAGTTGCCCATACTCCTGAAAACAAGATGGTCAGTAAAGGTTCTGTTATTCCCAGTGATCCTGCTACTACTCATATTGATGATGATGAGGCTTATCATGAAAGCTCGAGACTTCCCTCAGCCAGTTTTAAATCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGCTTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACAATAGCAGATTATTTATATTCTTGGAGGAAGAGGAAGATTTGGTCTCATCCTGAGCCTCAACCATCTACTAATGCCGAGAAGATTGAATCAGAAGCTTTGGTTCACAAGCCAGATTTCCCTGAAAGCAATGCTAATGGCTATAATCAGTTTGGAGTATTAGTAACAAAAGGAAATCATCCTCATTCATTTTTATCTCCTAGTGGGTTCAAAGGCGGAAACTTACTGAAAGGTCAAAATGTTTCTTCTCCTTACAATGACTCTAAAGATTTGTCATTCATTGTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCGAAGGTATCTTTTGCTGATTACATACGACATTTTGTTGAGAAGGAAGTGAACAAAATAGTTCCTTTCCCAGAAGAAAACAAAATAAATGAGGTTGCTGTTAGTGACACTTGCTTTTCAGATATACTTGCTGACAAAACGTCTGTGAAGGAAACTCTAAATGAGAAGTCTTTGGATTCTTTTGAGGAAGGAAATTCATTTGGCAAGTCTGCATCTGGAAACCTTATGTCTGATATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATATGGAGATGATGTGGTTGAAGAGGAGAGTGATAACCTACCACCTGGAATTGAAGAGAAGAGTCAAACAGTTGTCCTACACCGCGATTTGAAATTTCGACCTTCGAGGTCAGTTGAATGTCATCCTAAGATCACAGAATATGTTGCAACTGCATTGTGCCGACAAAAATTGCACGATGAAGTTCTGGAAGAGTGGAAGTCGTTGTTTCTTGATTTTGTGCTCGATCAAGTTTTTAGATCAAGTACCTTAAAGAAACATTTTATGTCTGATGGGCAGGAGAAAGGAGAAGCGTTCAATTCAAGCAAGGAAAATTTGAATGGTGCTACTTCTGGACTGGGAAGAATGAAGGAAGGAGAAAAGAGTTCTGAAGTACGTCTGGTGATTGGAAAGAATACTTATTACCGCAAGAAGCTATCACGGATGGAGTTAGTTTCCTCACAGACTGTAGCAGAAAATGATTCTAGGCCAGGGAAGAAGCCCGTGGGCAAGTTGAGGAAACTTGTTTGTGGAGATGTTAGTGAGGCTGTTGAGGTTGAAATAGCTTCTGTTAAACATGGAAAGACAAAGAAGATTAAAGGGAAGAAGGACTCATGTTCCAAGGGCAGGTCTTCTGTCACTGTCAATGCTAGCTCACAAAGTGATCAATTATCTTTAAAGAATAAAGCTGGTCAGAAAGTGTTGAAGTTTTCAGAGAATGTTGTGAATGTTGTGAAATCCACTGTAAAGAAGCTTTCAGTGCCAACTGATAATAGCGTTCGTGAGAAGAAGGTTGTCAAAAGTGATGGCACTGTTAAAGAGAAAGCCACAGGTCATTCCTCGAGACAGATTCAAAATGCAAATAATAAAACATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGCATCTTCACATCCAACAAAGATTTTGAAAATTTCAAATGGTGGTGCTTTTCTGGATGGCAGTAAACAAGTTATTGTGGAAAGGACGAAGTCTGCTAAATCCAAACCATTGAACTTGTGTCCTAAATCTAGTGGATGTGCTAGGACTTCTATTGATGGTTGGGCGTGGCATAAATGGTCTAGAAGTGCCAGTCCTGCATATAAAGCACGTGTTAGGGGCCTTCCGAGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTAAAATTACGTAACCTTCTTGCTGCTGCAGAGGGTGCTGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGATTACGTTTTCAAAGGAGCAAGATCCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAAGCAGAGGACTTTGTGATTGAGTATATTGGAGAACTAATTCGTCCTCGGATATCAGATATACGGGAACGTCAATATGAGAGGACGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGAATAGCTAGATTTATTAACCACTCATGCCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGACATATAAAGGCTGGTGAAGAAATAACATACAATTACAAGTTCCCCTTGGAGGAGAAAAAGATTCCTTGCAACTGTGGTTCCAGAAAGTGTCGTGGATCATTGAATTAG 3597 0.3998 MVFSTAFLHEGGPFFSRKRPRALDLGHQNIDLHADAERCISTGDVPSSSNTDDKVDPDSGMEMSCPSNVNNGYVPVCSTTGNISHMDQSLCGYVQQPALVSGWMYVNESGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIMGISGTRMPTTAVYEQGRSFEAVPLASNPDSESVSHSQVNYCSKESNHLNPHSEPFNSLISCQMLREECCWLYEDEKGMKHGPHSISELISWHSHGYLKDSAVIFHSDKKYDTFVLLSVVNALKGDTTGTICRSGSKINEVDDMVELISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTDKKCKRQKLESVAHTPENKMVSKGSVIPSDPATTHIDDDEAYHESSRLPSASFKSVGSVENFWWSYAVVRKVLLAYCMQVMWNAVFFDTIADYLYSWRKRKIWSHPEPQPSTNAEKIESEALVHKPDFPESNANGYNQFGVLVTKGNHPHSFLSPSGFKGGNLLKGQNVSSPYNDSKDLSFIVESVENELHFSSKVSFADYIRHFVEKEVNKIVPFPEENKINEVAVSDTCFSDILADKTSVKETLNEKSLDSFEEGNSFGKSASGNLMSDIFSKAFKELCGYGDDVVEEESDNLPPGIEEKSQTVVLHRDLKFRPSRSVECHPKITEYVATALCRQKLHDEVLEEWKSLFLDFVLDQVFRSSTLKKHFMSDGQEKGEAFNSSKENLNGATSGLGRMKEGEKSSEVRLVIGKNTYYRKKLSRMELVSSQTVAENDSRPGKKPVGKLRKLVCGDVSEAVEVEIASVKHGKTKKIKGKKDSCSKGRSSVTVNASSQSDQLSLKNKAGQKVLKFSENVVNVVKSTVKKLSVPTDNSVREKKVVKSDGTVKEKATGHSSRQIQNANNKTSKSKRKHQMDGTASSHPTKILKISNGGAFLDGSKQVIVERTKSAKSKPLNLCPKSSGCARTSIDGWAWHKWSRSASPAYKARVRGLPSVQNKCIYSENNLSQLPNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYERTGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00202 1198 MobiDBLite consensus disorder prediction 729 743 - -
Vian4g00202 1198 ProSiteProfiles SET domain profile. 1059 1176 IPR001214 GO:0005515
Vian4g00202 1198 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 44 1198 IPR044570 GO:0042800|GO:0051568
Vian4g00202 1198 MobiDBLite consensus disorder prediction 888 903 - -
Vian4g00202 1198 MobiDBLite consensus disorder prediction 826 853 - -
Vian4g00202 1198 Gene3D SET domain 1045 1198 IPR046341 -
Vian4g00202 1198 ProSiteProfiles GYF domain profile. 236 286 IPR003169 GO:0005515
Vian4g00202 1198 Gene3D - 228 318 IPR035445 -
Vian4g00202 1198 Gene3D - 92 163 IPR035445 -
Vian4g00202 1198 SMART set_7 1059 1182 IPR001214 GO:0005515
Vian4g00202 1198 SUPERFAMILY SET domain 1055 1195 IPR046341 -
Vian4g00202 1198 CDD SET_SETD1 1047 1194 IPR037841 GO:0042800|GO:0048188
Vian4g00202 1198 MobiDBLite consensus disorder prediction 40 62 - -
Vian4g00202 1198 MobiDBLite consensus disorder prediction 888 936 - -
Vian4g00202 1198 ProSiteProfiles Post-SET domain profile. 1182 1198 IPR003616 -
Vian4g00202 1198 MobiDBLite consensus disorder prediction 835 853 - -
Vian4g00202 1198 SUPERFAMILY GYF domain 232 286 IPR035445 -
Vian4g00202 1198 MobiDBLite consensus disorder prediction 729 751 - -
Vian4g00202 1198 SMART PostSET_3 1182 1198 IPR003616 -
Vian4g00202 1198 Pfam SET domain 1071 1175 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00202 Vian-Chr4 1829774 1846897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00202 1058 1198 C2H2 Transcription Factor Family AT2G23740 36.810 1.42e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian4g00202 SET 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00202 - - gmx:100805708 1860.88