Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00201 ATGGTGAAGTTTCTGAAGCCGAACAAAGCAGTGATAGTGCTGCAGGGCCGTTACGCGGGGAAGAAGGCGGTGATAGTGCGAACCTTCGATGACGGCACGCGCGAGCGCCCCTACGGTCACTGTTTGGTTGCAGGAATAAAGAAGTATCCTAGCAAGGTCATAAAGAAGGACTCGGCCAAGAAGACCGCCAAGAAGTCGCGCGTGAAGGCCTTCATCAAGCTCGTCAATTACCAGCACTTGATGCCCACTCGCTACACGCTCGACGTGGACCTCAAGGACGCCGTCAACCCCGATGTCCTCAACGCCAAGGATAAGAAGGTCACCGCCCTAAAGGAGACCAAGAAGCGCCTTGAGGATCGCTTCAAAACCGGCAAGAACCGGTGGTTCTTTACCAAGCTCAGGTGTTACCCTTTTTTGGTTTTAGGGTTTGACTATGGTCTGTCTGGGTTAGAGTTTATGAGATTGATTTTGGATGAAGATGTTTTGGAATAG 492 0.5142 MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFIKLVNYQHLMPTRYTLDVDLKDAVNPDVLNAKDKKVTALKETKKRLEDRFKTGKNRWFFTKLRCYPFLVLGFDYGLSGLEFMRLILDEDVLE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00201 163 SUPERFAMILY Translation proteins SH3-like domain 2 134 IPR008991 -
Vian4g00201 163 FunFam 60S ribosomal protein L27 1 135 - -
Vian4g00201 163 Coils Coil 100 127 - -
Vian4g00201 163 PANTHER 60S RIBOSOMAL PROTEIN L27 1 134 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vian4g00201 163 SMART kow_9 4 31 IPR005824 -
Vian4g00201 163 Gene3D - 1 135 IPR038655 -
Vian4g00201 163 Pfam Ribosomal L27e protein family 52 134 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vian4g00201 163 CDD KOW_RPL27 6 88 IPR041991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00201 Vian-Chr4 1819805 1820831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00201 1 134 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.836 1.17e-78 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00201 K02901 - gmx:100799485 254.988