Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00194 ATGGAAGAAGAAGAGCAAAAAGTTATGGAAAAGAGTTGCAAGGAAACTCCTGTTCGAGTTTATGCTGACGGGATTTATGATCTCTTTCACTTCGGTCATGCCCGTTCTCTTGAGCAGGCTAAGAAACTGTTTCCGAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGATCACCCATAAGTACAAGGGCAAAACTGTTATGACTGAGAAGGAACGCTATGAGTCTCTTCGCCACTGCAGGTGGGTTGATGAAGTTATTCCAGATGCGCCATGGGTAATCACCAAGGAGTTCCTTGACAAGCATCAAATTGACTATGTGGCACATGATAGTCTTCCTTATGCTGATGCAAGTGGAGCTGGAAAGGATGTGTATGAATATGTTAAGTCTGTTGGAAAATTTAAGGAAACAAAGCGGACTGATGGAATTTCTACTTCTGATATTATAATGAGAATTATCAAAGATTATAATCAATATGTAATGCGTAATTTGGACCGTGGTTACACAAGAAAGGAACTAGGTGTCAGCTATGTGAAGGAGAAGAGATTGAGAATGAACATGGGACTTAAAAAATTGCAGGAGAGAGTGAAGAAACAACAAGAGAAAGTGGGAAAAAAGATTCAAACGGTGGGAAAAATTGCTGGAATGCACCCTAATGAATGGGTTGAAAATGCAGATCGATTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGCTGCCATAAAATGGGAACAGCAATCAGAGACAGAATACAAGAACAATTGAGGGCACAACAGCTGAAATCTCTTCTTTATGATGAGTGGGATGATGATGATTCATTCTATGATGGTGAATACTACTCCGACTAA 849 0.4005 MEEEEQKVMEKSCKETPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITHKYKGKTVMTEKERYESLRHCRWVDEVIPDAPWVITKEFLDKHQIDYVAHDSLPYADASGAGKDVYEYVKSVGKFKETKRTDGISTSDIIMRIIKDYNQYVMRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLQERVKKQQEKVGKKIQTVGKIAGMHPNEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLRAQQLKSLLYDEWDDDDSFYDGEYYSD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00194 282 PANTHER CYTIDYLYLTRANSFERASE 7 273 IPR045049 GO:0004105|GO:0006657
Vian4g00194 282 SUPERFAMILY Nucleotidylyl transferase 19 151 - -
Vian4g00194 282 NCBIfam cytidyltransferase-like domain 19 86 IPR004821 GO:0003824|GO:0009058
Vian4g00194 282 Coils Coil 182 209 - -
Vian4g00194 282 Pfam Cytidylyltransferase-like 21 150 IPR004821 GO:0003824|GO:0009058
Vian4g00194 282 FunFam Choline-phosphate cytidylyltransferase 2 1 238 - -
Vian4g00194 282 CDD CCT 17 167 IPR041723 -
Vian4g00194 282 Gene3D HUPs 1 238 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00194 Vian-Chr4 1768124 1773491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00194 44 280 Acyl Lipid Metabolism Gene Families AT2G32260 77.500 3.33e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00194 K00968 - gmx:100791886 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00194 4 1768124 1773491 Vian4g00194 4 1768124 1773491 ECH