Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00170 ATGGCATCTTCCGAGGTTGAGATTGCTTCTTCCTCGCCCTTCGGTTCCGTTCTGAGAGACCGCAACCACCGCGAAGAATGCAGGGAAAGCAACGCCAAGGGCACGCATAATCATCATGCCAAGTTACAAAGAAACAACAAGAACTTTGTCACGGACATTAACACGTGCCGGGGGGTGTCTTCTGATTCCGCAACAAACGAAAACAACAGCGGCGGCAGCACGAACAAAGGCGTTAACCAGCGTAAGGCTCCCAAAAACAGTCGCTTGGAGAAACTTCGTTTCACACGAGCCAACTCCTTCAATGACAACGGCAGCAGCAACAACAACAACAAAAAGGAGACCTCTTTGTCCATGTTGATCAGCCCCAGACACTCACAGCTTCTCGATCGATGGGCAGCGAGACAGGCTCGGGAGATGGTGTCGAATTTGGAAAATGGGGCTGAACTGTTGTCAATGGATGACGTTGACATTTTCCCAAGGACACCCAGTTCGACATCTGAGGAAGAATCGTGCTCCTTGGAGATCCCTAATATGGCTGCCTCTTCTCTTGTTCAGATATGGGAGAAGAGACTGAAACAATCAGGTGTCTCCAAAACGAACACATCGTCTGAGAAGATTGGTTCGTCCTCTTCTCCCACGAATGAGAATGCTAATGCTTCATTCCCCGAGGAAGAATGCTTTGATGGACCCTCAGGGAATGAAGAAAGTTCCTTTCAGTCCTCATTTCCTGAGTGGGAATCGAGTGACCATTCCATTTCGCCACAAGCCAGGTCTGAGAGTGGTGTCAGTGTTGCTAGCATCATAAAGAAACTCACTTCTACCAGCCAGAATCAGAGTCCAACAGCTTCCTTTGTTGATGAGAATGAACAAGAAGGGTATTTTAGTAGTAGTGTGACAGGTTCTCCTTGTAGAGAGCGTGAATGTGGTCAACAACAACCACCTTCGGAGCATAAATTGGTGTGTCCCCTGCGAATTAGAGGGCGTCAGGCATTCAATGATATGCTTATGCAGATGGAGAATGACAGGCACAGGGAGCTCAACAACTTGTCAGAGCGTGGAACCGTGTCTAAGTTCGCACAAAGAGGTCGCATTCAGGCATTGCTTCGGATTAAATTATTGCAACGTGATCTGGTGGCTAATGATCGCTCCCGGCAGAATTCAACATCATGTGAAGTAAACAACAGACATTCACAAGGGTCTGCAATTATGCAATTAAGGGAAAGATTTTGCAGTGGGGTTGAACCTAGAATTCCGGTCCATGCAGAAGTAGCTAACCCAAGAAGTCCTCAAAGAGAGGCAGTTAACAAAACCACTCAATTGGGTAACTCTGCCACCACTAATCAAGTCAGAAAAGACACAAGAAACCAGACAGCTCATGGTAGTGCAAATCATGCCACAAAATCCCCGCAAAAGTCTGTTTCACATACTAGAATAGATCATAATACAGAAGAAGCTCCTCCAAGTTCAGATGTCATGATCCAAGAAACAAATCCACGTTCAGATGCCAAGGCTCAACACAATGACTCAAAAGAAACTAGTGAGGCAACGACGTCCATGACTGATTCAGGTCTAAAAGAGATGACAGACAGGGCAGAAGCGAGTAGCGAACAGAATGCTAATACTAAAAGTAGTAATGATGAGACAGTAAATGAAGAAGATATTAGTAACGAGCAGTATGCTGAATCCAGTTACCAGGAGACAGTAGAAGAGGCAAGTAATCAGAATTATGCTGAAAGCAGTTATGGTGATGAGATGGAGGGAGAGGAAACTGACCAGAATTGTGACTATGAAACTAATTATAACTGGATCAGTGAAATTTCTAGGCCTAAGAGCTATTGGGAAGAGCGCAGGCAAGCCTGGTATAGAGAGATGCTTGAAACTGGTTCTCAGAATGAGGATATAAGGAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTTCGGGATAGAATGGATAGATTGATGGAATCTCATAGGGGAACTCAAGCACATTTAGTCAATAGCCAGGACTATGAGGAAAACAGCCAAGAATTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAGCTTCTCAAGATGGAAGAGATGCAATTGAGGAAGAAGAAGAGAAGGAAAATGCAGATGAGCATGAGCATGAGGATGAGAGCTTGATAAGCGATCCATATCATGAAGCTGGTGGTTATTCTAATCGTTCCTCATCATGCAGTTACAGGGACAATGAAGCCGGTGACGATTTTGATAGAGTTGTTTCACTATCCCGACAACCTTATCAATCTCAATCTTTCTATCAGGAGAGTCGGCAATCTGCATCTCCATCCACCAACCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCACATGGAGCAACTCTATCACGAGATGTCTGACCTGAAGAAAATCATAAAGGGCTGCATGAATATGCAGATGGAATTACAACAAACCATGAAAGTAGAGATTAACTCAGTTGAAAAAGAAAAAAAGAAATCCCGTAACAGGACTCCAAAAAAGAAAGGCAACTGCTGCATTTGCTATGAGGTGAAAGTTGACTCTGTTTTGTACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCATCGAGCTGCAATGTAACAGTGGAAAATGTCCCATATGTCGGGCTAAAATAGTGGATGTTGTTCGAGTATATATTGACGGTTAG 2706 0.4435 MASSEVEIASSSPFGSVLRDRNHREECRESNAKGTHNHHAKLQRNNKNFVTDINTCRGVSSDSATNENNSGGSTNKGVNQRKAPKNSRLEKLRFTRANSFNDNGSSNNNNKKETSLSMLISPRHSQLLDRWAARQAREMVSNLENGAELLSMDDVDIFPRTPSSTSEEESCSLEIPNMAASSLVQIWEKRLKQSGVSKTNTSSEKIGSSSSPTNENANASFPEEECFDGPSGNEESSFQSSFPEWESSDHSISPQARSESGVSVASIIKKLTSTSQNQSPTASFVDENEQEGYFSSSVTGSPCRERECGQQQPPSEHKLVCPLRIRGRQAFNDMLMQMENDRHRELNNLSERGTVSKFAQRGRIQALLRIKLLQRDLVANDRSRQNSTSCEVNNRHSQGSAIMQLRERFCSGVEPRIPVHAEVANPRSPQREAVNKTTQLGNSATTNQVRKDTRNQTAHGSANHATKSPQKSVSHTRIDHNTEEAPPSSDVMIQETNPRSDAKAQHNDSKETSEATTSMTDSGLKEMTDRAEASSEQNANTKSSNDETVNEEDISNEQYAESSYQETVEEASNQNYAESSYGDEMEGEETDQNCDYETNYNWISEISRPKSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHRGTQAHLVNSQDYEENSQELMAFLQERLHSARASQDGRDAIEEEEEKENADEHEHEDESLISDPYHEAGGYSNRSSSCSYRDNEAGDDFDRVVSLSRQPYQSQSFYQESRQSASPSTNHHSMEMELIYDLRGHMEQLYHEMSDLKKIIKGCMNMQMELQQTMKVEINSVEKEKKKSRNRTPKKKGNCCICYEVKVDSVLYRCGHMCACLKCAIELQCNSGKCPICRAKIVDVVRVYIDG 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00170 901 Coils Coil 821 841 - -
Vian4g00170 901 SUPERFAMILY RING/U-box 848 893 - -
Vian4g00170 901 PANTHER BNAC05G24000D PROTEIN 1 900 - -
Vian4g00170 901 Coils Coil 700 720 - -
Vian4g00170 901 ProSiteProfiles Zinc finger RING-type profile. 849 888 IPR001841 -
Vian4g00170 901 MobiDBLite consensus disorder prediction 44 82 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 1 17 - -
Vian4g00170 901 Pfam Zinc finger, C3HC4 type (RING finger) 846 893 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 93 112 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 430 472 - -
Vian4g00170 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 824 900 IPR013083 -
Vian4g00170 901 MobiDBLite consensus disorder prediction 232 260 - -
Vian4g00170 901 CDD mRING-HC-C3HC5_NEU1 846 898 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 193 220 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 18 36 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 293 315 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 421 590 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 1 112 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 693 747 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 555 580 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 293 308 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 193 260 - -
Vian4g00170 901 MobiDBLite consensus disorder prediction 762 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00170 Vian-Chr4 1549023 1552728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00170 849 897 C3H Transcription Factor Family AT3G06140 40.816 4.23e-06 48.1