Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00158 ATGGATTCTGGAAGGGATGCGGGTGGTGTGGCAGGAACAGTTCTAATTCCCATGCGTTTTGTTTGGACATATGGAGGAAGGAGTGTGTTTCTCTGCGGTTCTTTCACACGGTGGTCTGAGCTTCTACCGATGTCGCCAGTGGAAGGATGTCCAACCGTGTTTCAAGTTATTTATAATTTGCCACCCGGTTATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTTACGTACCAGGAGAATATGGGATGGTCAACACTGTCTTCTTGGCTACTGATCCCAACTACATACCTGTTTTGAATTCAGATGTTGCACCTGGAAATAGCATGGATGTGGATAATGAGGCTTTTCGCCGAGTGGTCCGGTTGACTGATGGTAGTGAGGTGCTGCCAAGAATATCCGAAGCTGATGTACAAATCTCCCGTCAGCGTATTTCTGCATTTCTTTCTTCCCACACTGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGACGTTGATCTACCAGTGAAACAGGCATTTCATATACTGCATGAGCAAGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCATGGGTCGAATCTGACAGAGGAGGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCTTATCTGAATAGGCAGAACAATGGACATGGAGCTGTGTTTTCCAGACGTTTTATCCATTCAGGGCCATATGACAATCTGAAAGATATTGCCGTGAAAATCCTCCAAAAGGAGGTTTCAACTGTTCCTGTTATCCATTGTTCTTCTGAACATGCTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGCACTTCAATTTCCAATCTGTGCAATCCCTGTGGGCACGTGGGTACCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCTATAGTTGATGATAATGACTCGTTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGAACAGAGCGTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGGTGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGCTTGGCAAATCCAGGTGTGAGGCGGCTTGTGATTGTGGAAGCCGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGCGACATATTCAAGTTCTTCCTTGGTGGTTAG 1455 0.4412 MDSGRDAGGVAGTVLIPMRFVWTYGGRSVFLCGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGMVNTVFLATDPNYIPVLNSDVAPGNSMDVDNEAFRRVVRLTDGSEVLPRISEADVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHSISAWKEGKSYLNRQNNGHGAVFSRRFIHSGPYDNLKDIAVKILQKEVSTVPVIHCSSEHASFPQLLHLASLSGILKCICRYFRHCSSSLPALQFPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00158 484 Gene3D - 140 323 IPR046342 -
Vian4g00158 484 Pfam Glycogen recognition site of AMP-activated protein kinase 16 96 IPR032640 -
Vian4g00158 484 SUPERFAMILY CBS-domain pair 348 483 IPR046342 -
Vian4g00158 484 Gene3D - 340 483 IPR046342 -
Vian4g00158 484 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 140 481 - -
Vian4g00158 484 SMART cbs_1 351 399 IPR000644 -
Vian4g00158 484 SMART cbs_1 169 218 IPR000644 -
Vian4g00158 484 SMART cbs_1 433 482 IPR000644 -
Vian4g00158 484 ProSiteProfiles CBS domain profile. 163 225 IPR000644 -
Vian4g00158 484 SUPERFAMILY E set domains 16 97 IPR014756 -
Vian4g00158 484 SUPERFAMILY CBS-domain pair 150 320 IPR046342 -
Vian4g00158 484 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Vian4g00158 484 Pfam CBS domain 349 395 IPR000644 -
Vian4g00158 484 Pfam CBS domain 436 482 IPR000644 -
Vian4g00158 484 ProSiteProfiles CBS domain profile. 429 484 IPR000644 -
Vian4g00158 484 Gene3D Immunoglobulins 16 109 IPR013783 -
Vian4g00158 484 ProSiteProfiles CBS domain profile. 347 404 IPR000644 -
Vian4g00158 484 CDD E_set_AMPKbeta_like_N 17 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00158 Vian-Chr4 1427433 1435939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00158 6 124 Protein tyrosine phosphatase (PTP) family AT3G01510 28.125 2.93e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00158 - - gmx:100785692 920.228