Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00154 ATGGAAGATAGCTTTGGAGGCAGTTCCTCGAAGGACAAGTGCAGCATCAAGGAACAAGACCAGTTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTCTGCCGCAGAATGCAAAGATCTCGAAGGAAGCAAAAGAGACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCTTCGGAGAAGTGCAGAAAGGAGAGGAGAAAGACAGTGAATGCTGATGACATTTGCTGGGCATTGGCTACGCTAGGATTTGATGACTATGCTGCACCAATGAGAAGGTACTTGCACATATATAGAGAGCTTGAGCTAGACCGTAATAATAGTAAGCTCAATCATCATGAAAGATAA 369 0.4444 MEDSFGGSSSKDKCSIKEQDQLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNADDICWALATLGFDDYAAPMRRYLHIYRELELDRNNSKLNHHER 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00154 122 FunFam Nuclear transcription factor Y subunit B-6 11 122 - -
Vian4g00154 122 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian4g00154 122 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Vian4g00154 122 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Vian4g00154 122 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Vian4g00154 122 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vian4g00154 122 SUPERFAMILY Histone-fold 19 118 IPR009072 GO:0046982
Vian4g00154 122 Gene3D Histone, subunit A 9 122 IPR009072 GO:0046982
Vian4g00154 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 86 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00154 Vian-Chr4 1375869 1376237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00154 16 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.832 4.05e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian4g00154 CBFD_NFYB_HMF 1.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00154 K08065 - gmx:100794513 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00154 4 1375869 1376237 Vian4g00154 4 1375869 1376237 ECH
Vian1g00255 1 2258671 2259066 Vian4g00154 4 1375869 1376237 PCT