Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00153 ATGATTCGCTTCCAAAGCATCAAACCCCTTTTTCTCCACTCCAAGGGACTCACAACCCCTTTTACCTCAACACTCTCTCTGAAACACTTCTCCCTCACTTCGCAACAACACTCATTCACCGTTTCCTACCTCATAGACACCTTTGGCTTCTTACCACAAACCGCTCTCAAGGTTTCCAAGCACGTTAGCTTCGGTACCCCTCAAAAGCCCGACTCAGTCATCGCTTTCTTCAACAGAAATGGATTCACCCACGCTCACATCAACAACATCGTCAAAAGCATACCCAACATACTCATATGCAACGCTGACGAGAGGCTTTCGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTGCTTCTGATATCGTTCGCCTCGTTAATAGGTGCCCCAGAATCCTCGTATCCAGCCTCAAGAACAACGTGATCCCCTCCTTCGAATTGGTGAGAAGGTTCCTCCAATCTGACCAGAAAACCATTGATTGTGTTTTCTGTAGTAGACCTTTCCTTCGATATAACGTTGGATCGCAGAATGTGGATATGTTGCTTGATGTTGGAGTCAAGGACTCCGGCATCGGCTATTTGTTCAGAGGGAGGCCCTCTATATTCTTGTCTACTAACTTGAGGGAGGTTATTGATGAAGTTAAGGAAATGGGGTTCGACCCCTCCAAGATAACTTTCGTCATTGCCTTGCACGCCAAATGGGTTCTGTCGAAATCGCGGTGGGACGCGAAAGTTGATGCCTTTAAGATGTGGGGTTGGTCTGAGGAAATGGTTTTTGATTCGTTCAGGAAGCATCCCCTCTTAATGTTGGTATCCAAAGATAAAATTAATGAGATCATGAGATTTTGGGTTGTTGAATTAGGTTGGGACCCTTTGGCACTAGCCAAAATGCCCAATATTTTTGGATTCAGTTTGGAGAGAAGGATTGTTCCCAGGGGTTTGGTTGTCCGGTATTTGATTGCCAAAGGTTTGAGAGAGAAGAGTGCCAACTTGTATACCCCGTTTGGTGTTTCTGAAGAGTTGTTTCTTAAAAGTTTTGTGATGCGTTTTAAGGAGGAATCGTCTCAACTGTTAAAGCTTTATCAGAGCAAAAAATGTTTCCAAGAAAACAGGGAGGACGGTGTAGAATCTGCCAGTTAG 1143 0.4453 MIRFQSIKPLFLHSKGLTTPFTSTLSLKHFSLTSQQHSFTVSYLIDTFGFLPQTALKVSKHVSFGTPQKPDSVIAFFNRNGFTHAHINNIVKSIPNILICNADERLSPKFQFLLSKGASASDIVRLVNRCPRILVSSLKNNVIPSFELVRRFLQSDQKTIDCVFCSRPFLRYNVGSQNVDMLLDVGVKDSGIGYLFRGRPSIFLSTNLREVIDEVKEMGFDPSKITFVIALHAKWVLSKSRWDAKVDAFKMWGWSEEMVFDSFRKHPLLMLVSKDKINEIMRFWVVELGWDPLALAKMPNIFGFSLERRIVPRGLVVRYLIAKGLREKSANLYTPFGVSEELFLKSFVMRFKEESSQLLKLYQSKKCFQENREDGVESAS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00153 380 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 PANTHER CGI-12 PROTEIN-RELATED 36 352 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 Pfam mTERF 75 228 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 Pfam mTERF 176 341 IPR003690 GO:0003690|GO:0006355
Vian4g00153 380 Gene3D Transcription termination factor 3, mitochondrial 169 361 IPR038538 -
Vian4g00153 380 FunFam Mitochondrial transcription termination factor-like 138 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00153 Vian-Chr4 1370343 1371485 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian4g00153 mTERF 2.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00153 K15032 - gmx:100792944 426.787