Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00152 ATGTTGAATAAACTTCTGTACTTGAAATGTGTCACTTCCACAGCAACATCACCTTACCCTTTTATCCACCACTACCCATTCCTCCTTTCTCTCTGTTTCTGCACAGCCACTTCAAATTCACCCTCATTTGCGGTATCCTACCTCGTTGACAACTTTGGATTCTCTCCTGAATCTGCTTCCAAAACATCTAAGTCCTACAATATTTGTTTCCAGACCTCAGAAAAGCCCGAGACAGTGGTCAGATTCTTCAGAAATCACGGTTTCTCTAATGTCCAAATAAACCATATGGTTAGAAGGTCACCATGGTTGCTTTCTTGTGACCCATGCAAAAGGTTATTGCCAAAGTTTGAATTTTTACTCTCAAAGGGTGTTTCTAGCTCTGAAATTGTTGACCTAGTGAATAAGTACCCTACAGTACTGGGTTCAAGCCTGAAGAATCAGATAGTTCCAAACTATGAATTGATATATAAGTTCTTGCAATCTGATGTGAAGACTATTGGTTGTATGCTTGGTAATTCATTTTTCTGTCGGGGCGATCTTCTAGCACACAACATCAGATTGCTGCTGGAGAATGGAGTGAGAGAATCGAACATTGCAAGATTGCTTGGGAACCGTTGTAAGGGGGTCTTTGGCTCAAATGATATGGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGATTTGATCCTTCAAAAGCAGCTTTTGCTATAGCGTTGATGGCCAAAAAAGAAACGACTCCTTCCATGTGGAAGCAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCCTTGTCTGAAGCATTTAGGAGGCACCCTCACGTTATGTTGGCATCCATCAAAAAAATAAATATTGTGCTGAACTTTTGGGTCAATCAGTTGGGTAGGGATGCTTTGGAACTTGTCCAATTTCCAAAGATTTTCGGGTTGAGTATGGAAAAGACAATCATTCCAAGGTATCGTGTTTTCCAGCATTTACTTGCTGAAGGCTTGAGGAAAAGCAGTGCCAGCTTTATTACGCCGATTGCTGTTTCTGAAAAGGTCTTTATTAAAACCTTTGTGACATGTTTTAAGGAGGAATCATGTCAACTATTAAAGTTGTACCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATGGGGCAGTTCTCAAATTGTTAACTCATGA 1182 0.4052 MLNKLLYLKCVTSTATSPYPFIHHYPFLLSLCFCTATSNSPSFAVSYLVDNFGFSPESASKTSKSYNICFQTSEKPETVVRFFRNHGFSNVQINHMVRRSPWLLSCDPCKRLLPKFEFLLSKGVSSSEIVDLVNKYPTVLGSSLKNQIVPNYELIYKFLQSDVKTIGCMLGNSFFCRGDLLAHNIRLLLENGVRESNIARLLGNRCKGVFGSNDMVKLVKEVKDLGFDPSKAAFAIALMAKKETTPSMWKQKVDTFKKWGWSDEALSEAFRRHPHVMLASIKKINIVLNFWVNQLGRDALELVQFPKIFGLSMEKTIIPRYRVFQHLLAEGLRKSSASFITPIAVSEKVFIKTFVTCFKEESCQLLKLYQEKVSVQGKEEVGAAWGSSQIVNS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00152 393 Gene3D Transcription termination factor 3, mitochondrial 173 367 IPR038538 -
Vian4g00152 393 Gene3D Transcription termination factor 3, mitochondrial 43 172 IPR038538 -
Vian4g00152 393 Pfam mTERF 250 350 IPR003690 GO:0003690|GO:0006355
Vian4g00152 393 Pfam mTERF 81 224 IPR003690 GO:0003690|GO:0006355
Vian4g00152 393 PANTHER CGI-12 PROTEIN-RELATED 40 360 IPR003690 GO:0003690|GO:0006355
Vian4g00152 393 FunFam Mitochondrial transcription termination factor-like 144 362 - -
Vian4g00152 393 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Vian4g00152 393 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vian4g00152 393 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vian4g00152 393 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00152 Vian-Chr4 1366361 1367542 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian4g00152 mTERF 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00152 K15032 - gmx:102663414 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00257 1 2271885 2273000 Vian4g00152 4 1366361 1367542 PCT