Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00149 ATGTTTCATTCCCAACGCTTCAAACCCTTTTTTCTCTATCTGAAGTCACTCTCAAGAACCCCTCTTCAAACCCCACAACCCAACAATCTTTTCCCCTCGATACTCTCTCTGAAACACTCCTCAAATGCTTCACAGCAACATTCTTTCACGGTTTCCTACCTCGTAAACGACCGCGGGTTCTCCCCAGAAACCGCTCTGAAGGCTTCCAAATTCATTCAATTCGAAACCTCGGAAAAGCCCGACTCAGTCATCGCCTTCTTCAGAGACAACGGATTCAGCAACACCCAGATAAACAGCATCGTCAGAACAGCACCCAATGTTCTCACTTGCGACCCCCACAAAAGGGTTTTTCCAAAGTTCGAGTTTTTACTCTCCAAAGGGGCCTCACGCTCTGACATTGTGGAACTGGTGAGTAGGAGCCCCAGAATCCTTTACTGCAGCCTCGAGAATAACATTGTCCCTTCGTATGAACTGATGAGGAAGTTTTTTCAAACTGATAAGGAAACGATGGATTGCATACGCTCTTGTAGTCATTTCTTTGGTACTGATCGTGTGGTGAAGAATGTGAAACTTTTGGTTGATGATGGAGTCACTGATCGTGTACTAGCCTTTTTGTTACGCAGGAGAATTTCTATAATCTTGTGTTCTTCCTTGAAGAGGACTTTGGATGAGGTTAAGGAAATGGGGTTTGATCCTTCCAAGTTGAGCTTTGCCATCGCGCTGCTGGCGAAAACGACCATTCCGAAATCGCGATGGGAGAGGAAAGTTGATGCCTTTAAGAGATGGGGTTGGTCTGAAGAATTGGTTCTTAGAGTGTTTAGGAGGCAACCCCTCGTAATGTTGGTGTCCCAAGATAAGATTGATAGGATTATGAGATTTTGGGTTAAGCAATTAGGTTGGGACTATTTGGCTCTTACCAAGAAGCCAGAGATTTTTGGATTTAGTTTGGAGAGAAGAATCATTCCAAGGGCACATGTTGTCCAGTATTTACTCAAGAAAGGTTTGAGGAGTAAGAGTGCCAGCTTGATTACGCCATTTTCTGTTTCTGATAAGGTATTTATTGAAAACTATGTGATGCGTTTTAAGGAGGAGACAAGTGAACTATCAAAGCTGTACCAATTCAAAGACTAA 1131 0.435 MFHSQRFKPFFLYLKSLSRTPLQTPQPNNLFPSILSLKHSSNASQQHSFTVSYLVNDRGFSPETALKASKFIQFETSEKPDSVIAFFRDNGFSNTQINSIVRTAPNVLTCDPHKRVFPKFEFLLSKGASRSDIVELVSRSPRILYCSLENNIVPSYELMRKFFQTDKETMDCIRSCSHFFGTDRVVKNVKLLVDDGVTDRVLAFLLRRRISIILCSSLKRTLDEVKEMGFDPSKLSFAIALLAKTTIPKSRWERKVDAFKRWGWSEELVLRVFRRQPLVMLVSQDKIDRIMRFWVKQLGWDYLALTKKPEIFGFSLERRIIPRAHVVQYLLKKGLRSKSASLITPFSVSDKVFIENYVMRFKEETSELSKLYQFKD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00149 376 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 Gene3D Transcription termination factor 3, mitochondrial 165 370 IPR038538 -
Vian4g00149 376 FunFam Mitochondrial transcription termination factor-like 148 365 - -
Vian4g00149 376 PANTHER CGI-12 PROTEIN-RELATED 45 362 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 Pfam mTERF 251 353 IPR003690 GO:0003690|GO:0006355
Vian4g00149 376 Pfam mTERF 85 288 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00149 Vian-Chr4 1351642 1352772 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian4g00149 mTERF 9.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00149 K15032 - gmx:102666739 543.502