Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00141 ATGGATTTCTTAAACCAGGAGATAAGCATGCATAGCCCTGAAGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGTGATAGAGGTATACCTTACAAAGAAATCAATAGAACAAGCAGTTTCTCTTGCTTATCCGGTGCTGCCTTAAGTGCAAATGCTACACTTGCCAACACAAATATCTGCAATGGCGTAATAGGAGAAGAAATCCTTCCGAGTTTGGACTCTCCTAAATCGTTTCGAACAATACCCTCTTCATCAAGTTTTCCAAAATTGGAAATATTATCATCTTCTGTCCATAGTAGTTTTTCAAATCTAAGTTGCAGCCCTTCCACTCCAACTAACATACTTGAATATGACTCATGTTCATTAAAATCTATGAGTGCTCCTTCTAGAACTGAAGGTTTTCTTAATGCCATGGATGTTCAAGTTGCTGGAGGAGCGGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCTATTTATGATGGCTTTAATGGGAGAGATGCAGCCGACTTTTTGGCGGGTACCCTTTATGATACCATTGTATCTTATTTTAATATGTTACGTTGTGATTTGGAACCAGATTTCATAAAAGCTTCTGACAATGTGGCTGTGGGTGAATCCTTTCCATATAATTTGGATGATAGTCTTATTCTTCTGGAGCACCAATCTCCTTCAAAATTTAAGGGAAACAATTCTGGTCTTGACTGTTTGGCAAACATTACTCCACCTTCCAAGTCGGAAGCATCTCCTAAATCATTTTCACATAGTAAAGTACTTGATGGTCTCCAGCATGTTCTTAGTCAGGTTGAGAATGATTTCTTATGCATGGTTGAACAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCTTGTGTTTTGCTTGTGCTTCTTCATGGCAATGATTTATATACACTTAATCTTGGTGACAGCAGAGCAGTATTGGCGACATGCTGTACAGATAACAGAATGAATGGGAATGAGAGATTGAAGGCTATCCAGCTCACATATTGTCATACAGTTGACAATGAAGCCGAAAGAGCTCGAGTTCTTGCTGATCATCCTGATGATCCTAAAACCATAGTAGCAGGGAAAGTGAAGGGAAAACTGAAGGTTACTCGAGCTTTAGGAGCAGGGTACTTGAAAAAGAAAATTCTGAATGACGCATTAATGGGAATCCTTCGAGTTCATGATCTCACTAGCCCACCATATATTTCAACTGATCCATCGTTGAATGTGCACAAAATCTCAGATTCTGACCAATTTGTTATAGTTGCGAGTGATGGTTTATTTGACTTCTTCAGTAATGATGAAGCAGTACAGCTTGTAGAGTCTTATATATTGAGAAATCCTTTTGGTGATGCAGCAAAATTTCTTATTGAGCAATTAGTTGCAAGAGCAGCTGATTCTGCAGGCTTCAGCATGGAGGAGTTGATGAATGTTCCCGACGGGAGGAGGAGGAAGTACCATGATGATGTGACGGTAATGGTGATCATCCTTGGCATGAATCAACGGACTTCAAAAGCATCAATTTGCACCTAG 1575 0.3956 MDFLNQEISMHSPEGELKISFGYQCNSDRGIPYKEINRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRTIPSSSSFPKLEILSSSVHSSFSNLSCSPSTPTNILEYDSCSLKSMSAPSRTEGFLNAMDVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIVSYFNMLRCDLEPDFIKASDNVAVGESFPYNLDDSLILLEHQSPSKFKGNNSGLDCLANITPPSKSEASPKSFSHSKVLDGLQHVLSQVENDFLCMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCCTDNRMNGNERLKAIQLTYCHTVDNEAERARVLADHPDDPKTIVAGKVKGKLKVTRALGAGYLKKKILNDALMGILRVHDLTSPPYISTDPSLNVHKISDSDQFVIVASDGLFDFFSNDEAVQLVESYILRNPFGDAAKFLIEQLVARAADSAGFSMEELMNVPDGRRRKYHDDVTVMVIILGMNQRTSKASICT 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00141 524 Gene3D - 107 520 IPR036457 -
Vian4g00141 524 SMART PP2C_4 127 509 IPR001932 -
Vian4g00141 524 PANTHER PROTEIN PHOSPHATASE 2C 144 509 IPR015655 GO:0004722|GO:0006470
Vian4g00141 524 Pfam Protein phosphatase 2C 275 478 IPR001932 -
Vian4g00141 524 CDD PP2Cc 149 511 IPR001932 -
Vian4g00141 524 SUPERFAMILY PP2C-like 149 512 IPR036457 -
Vian4g00141 524 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00141 Vian-Chr4 1293704 1295606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00141 13 521 PP2C-type Phosphatase Gene Family AT3G16560 61.832 0.0 582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00141 4 1293704 1295606 Vian4g00141 4 1293704 1295606 ECH
Vian1g00268 1 2370432 2372090 Vian4g00141 4 1293704 1295606 PCT