Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00140 ATGCAGAACGAGGAAGGACAGATCACCGAGCTTTACATCCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACTGCGAAGGACCATGCTTCGGTTCAGATTAACATTGGGCATGTGGATGAGAATGGTATCTACAATGGTCAATTCTCCACCTTTGCCCTTTGCGGCTTCATCCGTGCTCAGGTTATGCCAGTGGGTAGCAGTGTTTTTGTATTTTTTGCTACTTTGGAGCTTGCTTTTCATTTTATGAATACGTGGAATGTTGTGTTTGCTATTTGTGTTCAGGGTGATGCCGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGCTGAAGTTAAGCAACAGTAG 351 0.4444 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQVMPVGSSVFVFFATLELAFHFMNTWNVVFAICVQGDADSALDRLWQKKKAEVKQQ 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00140 116 Pfam Ribosomal protein S21e 1 61 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian4g00140 116 FunFam 40S ribosomal protein S21 1 71 - -
Vian4g00140 116 PIRSF RPS21e 66 116 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian4g00140 116 PIRSF RPS21e 1 70 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian4g00140 116 Gene3D - 1 115 IPR038579 -
Vian4g00140 116 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Vian4g00140 116 PANTHER 40S RIBOSOMAL PROTEIN S21 1 63 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00140 Vian-Chr4 1289304 1290580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00140 1 115 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 59.130 1.32e-44 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00140 K02971 - gmx:100817753 148.288