Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00136 ATGGATTTGGTGGAGGAGAAGAGGAAGCAGCGAGAATTTGCATTAGCGTCGGTGTCTGAGGTTTCTTCTTCTTCCTCTTCATCTTCTTTGTCGGGTGTTGCTGTGTTCGCTGGTGACCGTCTTCAAATTCGGAACGAATCTAACCTTATTCTTCTCAGTGCTCATCTTACAGATGTTCAGCCATTCAGGTTAGGTCCTATTGAATCTGTTTGCATGGTGGAAGGGTCTGATGCGGACAAACAGACATCGTATTCCAGTGGAGTCGCTATACAGTTTAGAAATGTGGAAGAGAGTGAGGCCTTCCATTGTGTATTCCAACAATGGAAGAAGGAATTCAATGTTCAAGGAGGAAATTTACCAAATGGAACTAATGTAATAACTTCTAAAAGCAAGTTTGATGAGAAGATAGAGTCATCTTCTGCAAAAATGTATTTTCATTATTATGGACAACTTCTGCATCAACAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCAGTTATTGAGAATCGGTCAGATTTCATGGGCCGTGTAGTAGTTGATGTTGGTGCTGGTAGTGGAATTTTGTCATTATTTGCTGCCCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCAGAATACGCACGTAAACTTATAGCTGGGAACCCAATACTTGGACAACGAATTACAGTTATTAAAGGCAAAGTTGAGGATGTTGAACTGCCTGAGAGAGCAGATATTCTGATCTCTGAGCCCATGGGCACCTTGTTAGTCAATGAAAGAATGCTGGAGTCTTATGTCATTGCAAGGGATAGGTTTCTCACCCCTAATGGGAAAATGTTTCCTAGTGTAGGAAGGATTCACATGGCTCCCTTCAGCGATGAATATTTGTTCGTTGAAATTGCTAATAAGGCACTGTTTTGGCAGCAACAAAACTATTATGGCGTTGATTTGACGCCCTTACATGGTACTGCCTTCCAAGGATACTTTTCTCAGCCTGTGGTCGATGCTTTTGATCCAAGGTTGTTAATAGCTGCTCCTATGTTCCATGTGATAGACTTTACCAAAATAAAGGAAGAGGAGCTATATGAAATTGACATTCCTCTTAGATTCATAGCCACTGTGGGTGCCAGGCTACATGGGTTGGCTTGTTGGTTTGATGTGCTGTTCAATGGAAGTACTGCTCGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCTGTGTTCTCTCACAGCCAATATATGTTGTGGCAGGGCAAGAAATCACTGGCAGGATGCACTTGATTGCCCACACTGCGCAGAGTTATACAATCTATTTAACATTGTCAGCGAAAACATGGGGCCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGATCTGAAAGAACCTTACTATAGAATGTCTCAACCGCAAGCTTATCCATTAAACCAAGATCAGCAACCTCAAGTACTTCTACCGACACAAGATATAAACATCCAATCTCAAGATTTGGATGAGGTGGAGATGATGCACCAGCCTTCGCCCAAGTCCTGTGCTCAAATTGACTCCCTCATGCAGAATGCATAA 1611 0.4289 MDLVEEKRKQREFALASVSEVSSSSSSSSLSGVAVFAGDRLQIRNESNLILLSAHLTDVQPFRLGPIESVCMVEGSDADKQTSYSSGVAIQFRNVEESEAFHCVFQQWKKEFNVQGGNLPNGTNVITSKSKFDEKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRSDFMGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGKVEDVELPERADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVIDFTKIKEEELYEIDIPLRFIATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRCVLSQPIYVVAGQEITGRMHLIAHTAQSYTIYLTLSAKTWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLNQDQQPQVLLPTQDINIQSQDLDEVEMMHQPSPKSCAQIDSLMQNA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00136 536 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 147 458 IPR029063 -
Vian4g00136 536 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 137 452 IPR025799 GO:0016274|GO:0018216
Vian4g00136 536 CDD AdoMet_MTases 183 283 - -
Vian4g00136 536 FunFam Probable histone-arginine methyltransferase CARM1 286 493 - -
Vian4g00136 536 Pfam Ribosomal protein L11 methyltransferase (PrmA) 180 252 - -
Vian4g00136 536 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 114 467 IPR025799 GO:0016274|GO:0018216
Vian4g00136 536 Gene3D Vaccinia Virus protein VP39 123 284 IPR029063 -
Vian4g00136 536 Gene3D - 286 494 - -
Vian4g00136 536 FunFam Probable histone-arginine methyltransferase CARM1 124 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00136 Vian-Chr4 1263947 1271002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00136 144 433 C2H2 Transcription Factor Family AT3G12270 33.333 3.08e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00136 K05931 - gmx:100818828 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00136 4 1263947 1271002 Vian4g00136 4 1263947 1271002 ECH
Vian1g00273 1 2408643 2414574 Vian4g00136 4 1263947 1271002 PCT