Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00134 ATGTCTTCTTCCTCTCCACCTTCCTGGGTCACTTCACCTTCATGTTCCACTCTTGACATTGATTCATCTTCACCTACTGCTTTTCTCACTGTTCAGTGGTTAAGGTTTCTTCTTCTATCACCGTGTCCTCAACGAATTATTCTATCTGCTGTTGATTTTATCTTCTTGCTCATTGTCTTAGCCTTTTCAGCTGTTAAACTCTATTATAGATTCACTTCCCGTCACACCTCTTCCTCCTCTGTTACTAAACCCCTTTTGCAGGAGAAACGCTCTCACTATAGAGTCACCTTCTGGTTCAAACTGACCTTCTTGGTGACCACCCTTTTGGTTGCAGCTTATGCTGTTCTTGGCGTATTGGCCTTTCAAACCAGTCTTTCTTCATGGATAGTCATAGAGGCACTCTTTCGGCTCTTTCAAGCTGTGGCCAATATAGTAGTTGTGATCCTATTGGTTCACGAGAACAAGTTCAAAGCTTCGGAGCACCCTTTATCGCTGAGAACGTATTGGATTGCAAACATGGTGGTTTCATGCCTTTTTGCCATTTCGGCTGTTGTTCGCTTTGTGGTTGTGGATGAAGCGAGGTTGGAGCTTAGTTTGAGAGTGGATGACGTGTTTTCTTTGGTTAATCTCCCATTTTCTGCGTTCCTTTTCGTTGTAGCAATGAAAGGAGTAACGGGGATTCGGGTGATTAGAAATTCTGATGAAGTGACAGCATATCAGAGCCTTTCCAATGAGAGAAATTTGAGTCCTTATGCTCATTCTTCGATTTTTTCCAAAACAGTGTGGCTTTGGATGAACCCTTTGCTGAAGAAAGGGTACCAAACACCCCTCAAGCTCGATGATGTGCCTTCTCTTCCTCTGGATTTCCGAGCAGAAAAGATGTCAGAGCTTTTCCAAAGCAATTGGCCGAAGGAAGAGGAGAACAGCAAGCACCCGGTTGGTGTCACCTTGTTTAGATGCTTTTGGAAGCGCATAGCTTTCACTGGCTTCCTTGCAGTTATAAGACTTGCGGTTATGTACGTTGGTCCAATGCTTATTCAGAGTTTCGTTGACTTCAGCTCAAGGAAAGACAGCACCCCCCTTGAAGGACTTATTCTTATTCTGATCCTGTTTTGTGCAAAATCAATTGAGGTCCTCACTGTTCACCAATTCAACTTCAACTCTCAGAAACTAGGCATGTTAATCCGTTCCAGCATCATAACTTCCGTGTACAAGAAGGGTTTGAGGCTGTCAAGTTCTTCAAGGCAGGCTCATGGCACTGGCCAGATTGTGAACCACATGGCCGTTGATGCACAACAGCTCTCAGATTTGATGATGCAGTTTCATCCCATATGGTTGATGCCACTGCAAGTAACTGCAGCTTTGGCCCTTATCTACAACAGTATAGGCGTGTCAGCTCTCGCAGCGCTGCTTGGAGCCAGTTTGGTGTTTGTTTTCACTCTCATTCGCACCAAGAAGAGCAACACATTCCAGTTCAGGATAATGAAGAGCCGTGACCTGAGGATGAAGGCCACGAATGAGTTGCTTAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAGGAGTACTTTGGCAACAAGATTCAGCAGTTTCGCGAAGCCGAACACGGTTGGATTGGAAAGTTCTTGTACTACTTTGCCATTAACATGGGAATTCTGAGCACTGCTCCTTTGTTCGTATGTGTTCTCACATTTGGAGCTTCTGTTCTTCAGGGTGTTCCTCTGAACAGTGGCACAGTGTTCACAATCAGTTCAGTGATCAAGATTTTGCAAGAGCCTGTGAGGACCTTCCCTCAGGCTCTCATCTTGATTTCCCAAGCGATGATATCTCTTGGGAGGTTGGATGAGTTCCTGATGAGCAAGGAAACGGATGAGGGTGCAGTGGAGAGATTGGATGGATGTGATGGTGACACCGCTGTGGAGATAAAAAACGGAGAATTCTCCTGGGATGCTGCGGATGCAAATGTGGCTCTGAAAGTTGAAGACTTGGAGATCAAGAGAGGAGAACATGCTGCTGTTGTGGGAACAGTTGGGTCAGGCAAGTCTTCGTTACTGGCTTCTTTGTTAGGGGAAATGATCAAGATATCAGGAAAGGTTAGAGTTTGTGGGTCAATAGCCTATGTAGCACAGACATCATGGATTCAGAATGCAAGCATCCAAGACAACGTATTGTTTGGTTTACCAATGAACAGAGAGAAGTACGAAGAAGCTATAAGAGTGTGTTGCCTAGAAAAGGATCTTGAAATGATGGAATATGGAGACCAGACTGAGATAGGAGAAAGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTATACAACTTGCTAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCACAAACTGGGTCATTCATTTTCAAGGAATGTATCATGGGGGCTCTAAAAAACAAGACCATTTTACTTGTAACCCACCAAGTTGACTTCTTGCATAATGTTGACTGTATTATGGTGATGAAAGAAGGGAGAATCGTGCAAAGTGGGAAGTATGATGAACTTCTCAATGCAGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGCAGAGTCTAGCGATAAAGGTGGTGATGATTCGATTCAGTCTTCGAAACTGGCTCGACTCCCTTCAAAAGAAAAGGAAAAATCAGATGAAAAGCAATCTCAAAATCAGGCTAAGTCAGCTAACACCTCTGCTAAGCTCATTGAAGATGAGGAAAGAGAAACTGGTCGTGTGAACCTTAAAGTGTACAAACACTACTTCACTGAAGCATTTGGGTGGTGGGGTGTTGTACTGATGCTGGCATTGTCTATAGCATGGATGTTGTCCTTCTTGGCGGGTGATTACTGGCTAGCAATTGGAACTGCAGAAGGCACTAACTTTGCTCCTTCTACATTCATCACTGTCTATGCTTGCATAGCAGTTGGTGTAGCTGTTGTTGTGATGACAAGATCAATCTTATTTACTTATTGGGGTCTGAAGACATCTCAAAGCTTCTTCGTTGGACTGCTTCAAAGCATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCCTCTGGCAGAATTTTGAGTCGTGTATCCACCGATATACTTTGGCTTGACGTATCAATTCCAATGATAGTGAATTTCGTGATGGTTTCATACTTCTCAGTGATCAGCATCCTCCTTGTAACATGCCAAAATGCTTGGGAAACAGTCTTCCTCTTAATCCCACTGTTCTATTTTAATAACTGGTATCGGAAATATTACCTTGCATCTTCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCACCACTTTTCAGAATCCATTGCTGGTGTTATGACCATTCGTGGCTTCGGAAAACAGAACGCATTTTGCCAAGAAAATATTGACAAAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAATGGGGCCAATGAATGGTTTAGTTTTCGCTTGGACTACATGGGAGTGGTTTTCCTTAGCTTTAGCACTGTTTTTATGATCTTTCTCCCAAGTGCTATCGTGAGGCCAGAATATGTTGGTATGTCTTTGTCCTATGGTTTAGCACTCAGCAGTATTTTGTCATTGACTATAACACTGACTTGCAATGTCGAGAACAAAATGGTTTCAGTCGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCGCCATGGAAAATGGTTGATAGCTCTCCTCCTAAGAATTGGCCCAGCCATGGCTGCATTGAGTTAAACAATTTGCAGGTTCGGTATCGGCCAAATACTCCTCTGATTCTCAAAGGAGTCTCTCTCACCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGGAAATCAACCCTCATTCAAGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATTGTTGATGGGATCGACATTTGTACTGTTGGCCTTCATGATCTGAGATCTCGATTTGGAATTATCCCTCAAGATCCTGTTCTCTTTCAAGGAACAGTACGGAGTAACATTGATCCTCTTGGACTGTATTCAGAAGAAGAAATCTGGAAGAGCCTAGAACGTTGCCAACTGAAAGATGTGGTGGCTGCAAAACCTGAGAAACTTGAGGCTTCAGTGGTGGATGGTGGAGACAATTGGAGTGTGGGGCAAAGACAGCTTCTGTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTGTTCATGGATGAGGCAACAGCATCTGTTGATTCACAAACTGATGCTGTAATACAGAAAATCATCAGAGAGGATTTTGCAGACCGTACAATTATCAGCATTGCTCATAGAATACCTACAGTCATGGACTGTGACAAAGTTTTAGTCATTGATGCAGGGCTTTCAAAAGAATACGACAAGCCATCACGTTTGCTAGAAAGGCCTTCACTTTTTGCAGCATTGGTTAAGGAGTACTCCAATAGATCTGCATAA 4503 0.4368 MSSSSPPSWVTSPSCSTLDIDSSSPTAFLTVQWLRFLLLSPCPQRIILSAVDFIFLLIVLAFSAVKLYYRFTSRHTSSSSVTKPLLQEKRSHYRVTFWFKLTFLVTTLLVAAYAVLGVLAFQTSLSSWIVIEALFRLFQAVANIVVVILLVHENKFKASEHPLSLRTYWIANMVVSCLFAISAVVRFVVVDEARLELSLRVDDVFSLVNLPFSAFLFVVAMKGVTGIRVIRNSDEVTAYQSLSNERNLSPYAHSSIFSKTVWLWMNPLLKKGYQTPLKLDDVPSLPLDFRAEKMSELFQSNWPKEEENSKHPVGVTLFRCFWKRIAFTGFLAVIRLAVMYVGPMLIQSFVDFSSRKDSTPLEGLILILILFCAKSIEVLTVHQFNFNSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMMQFHPIWLMPLQVTAALALIYNSIGVSALAALLGASLVFVFTLIRTKKSNTFQFRIMKSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIQQFREAEHGWIGKFLYYFAINMGILSTAPLFVCVLTFGASVLQGVPLNSGTVFTISSVIKILQEPVRTFPQALILISQAMISLGRLDEFLMSKETDEGAVERLDGCDGDTAVEIKNGEFSWDAADANVALKVEDLEIKRGEHAAVVGTVGSGKSSLLASLLGEMIKISGKVRVCGSIAYVAQTSWIQNASIQDNVLFGLPMNREKYEEAIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDCIMVMKEGRIVQSGKYDELLNAGLDFGALVAAHESSMEIAESSDKGGDDSIQSSKLARLPSKEKEKSDEKQSQNQAKSANTSAKLIEDEERETGRVNLKVYKHYFTEAFGWWGVVLMLALSIAWMLSFLAGDYWLAIGTAEGTNFAPSTFITVYACIAVGVAVVVMTRSILFTYWGLKTSQSFFVGLLQSILHAPMSFFDTTPSGRILSRVSTDILWLDVSIPMIVNFVMVSYFSVISILLVTCQNAWETVFLLIPLFYFNNWYRKYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRGFGKQNAFCQENIDKVNASLRMDFHNNGANEWFSFRLDYMGVVFLSFSTVFMIFLPSAIVRPEYVGMSLSYGLALSSILSLTITLTCNVENKMVSVERIKQFTNLPSEAPWKMVDSSPPKNWPSHGCIELNNLQVRYRPNTPLILKGVSLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIVDGIDICTVGLHDLRSRFGIIPQDPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGLSKEYDKPSRLLERPSLFAALVKEYSNRSA 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00134 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 859 IPR027417 -
Vian4g00134 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g00134 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1494 IPR003439 GO:0005524
Vian4g00134 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 863 IPR003439 GO:0005524
Vian4g00134 1500 Gene3D - 1244 1494 IPR027417 -
Vian4g00134 1500 MobiDBLite consensus disorder prediction 872 915 - -
Vian4g00134 1500 Gene3D ABC transporter type 1, transmembrane domain 908 1241 IPR036640 GO:0005524|GO:0016020
Vian4g00134 1500 Gene3D ABC transporter type 1, transmembrane domain 312 620 IPR036640 GO:0005524|GO:0016020
Vian4g00134 1500 CDD ABCC_MRP_domain1 640 840 - -
Vian4g00134 1500 SMART AAA_5 667 840 IPR003593 GO:0016887
Vian4g00134 1500 SMART AAA_5 1286 1471 IPR003593 GO:0016887
Vian4g00134 1500 SUPERFAMILY ABC transporter transmembrane region 942 1240 IPR036640 GO:0005524|GO:0016020
Vian4g00134 1500 SUPERFAMILY ABC transporter transmembrane region 317 614 IPR036640 GO:0005524|GO:0016020
Vian4g00134 1500 CDD ABCC_MRP_domain2 1258 1478 - -
Vian4g00134 1500 Pfam ABC transporter 1277 1425 IPR003439 GO:0005524
Vian4g00134 1500 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Vian4g00134 1500 FunFam ABC transporter C family member 3 1243 1494 - -
Vian4g00134 1500 MobiDBLite consensus disorder prediction 889 903 - -
Vian4g00134 1500 FunFam ABC transporter C family member 5 908 1241 - -
Vian4g00134 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1493 IPR027417 -
Vian4g00134 1500 FunFam ABC transporter C family member 10 309 622 - -
Vian4g00134 1500 Gene3D - 621 886 IPR027417 -
Vian4g00134 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 326 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g00134 1500 Pfam ABC transporter transmembrane region 960 1187 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g00134 1500 Pfam ABC transporter transmembrane region 327 594 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian4g00134 1500 CDD ABC_6TM_ABCC_D1 327 614 IPR044746 GO:0140359
Vian4g00134 1500 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1496 - -
Vian4g00134 1500 Pfam ABC transporter 662 791 IPR003439 GO:0005524
Vian4g00134 1500 CDD ABC_6TM_ABCC_D2 945 1235 IPR044726 GO:0140359
Vian4g00134 1500 FunFam ABC transporter C family member 4 623 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00134 Vian-Chr4 1246305 1252645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00134 621 874 Calmodulin-binding Proteins AT2G36910 31.387 3.45e-26 115