Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00128 ATGATGAGTCACGCGAATTACACGGAGAATAACGTTCGGTTGATTAGGGAAATCGAAGGAAAGAGCGACTACTACGCGATTCTTGGATTGGAGAAGAGCTGCTCCGTCGAAGAGATTCGGAAAGCGTATCGGGAGCTCTCGCTGAAGGTTCATCCCGATAAGAACAAAGCGCGGGGCTCACAAGACGCGTTCAATAAAATCTCGGAGGCTTACAAGAGTTTGAAGGATGCCCATTCTAGAAGCACGCATGACCAGACCAACGGGCCGAGGCAGAGGAGGACCAGTCCTCCTCCTCGGCCCAACAGTCCTCTTCCTCGGCCCAGCGGCATGGAGAATCCCAAAAGGAGTCAGGTTAACGATTTTGTGCTTCTGGTTCTGCTTCTGCCGCTGTTGATGGTTATTCTGGTGGCGTGCTCGCCGTTTCTGAGCAGAGTATTCCTTGCTCTGATTTAA 453 0.5166 MMSHANYTENNVRLIREIEGKSDYYAILGLEKSCSVEEIRKAYRELSLKVHPDKNKARGSQDAFNKISEAYKSLKDAHSRSTHDQTNGPRQRRTSPPPRPNSPLPRPSGMENPKRSQVNDFVLLVLLLPLLMVILVACSPFLSRVFLALI 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00128 150 PANTHER AT29763P-RELATED 6 100 - -
Vian4g00128 150 SMART dnaj_3 22 79 IPR001623 -
Vian4g00128 150 MobiDBLite consensus disorder prediction 74 113 - -
Vian4g00128 150 CDD DnaJ 23 76 IPR001623 -
Vian4g00128 150 MobiDBLite consensus disorder prediction 93 107 - -
Vian4g00128 150 SUPERFAMILY Chaperone J-domain 19 90 IPR036869 -
Vian4g00128 150 ProSiteProfiles dnaJ domain profile. 23 87 IPR001623 -
Vian4g00128 150 PRINTS DnaJ domain signature 25 43 IPR001623 -
Vian4g00128 150 PRINTS DnaJ domain signature 59 79 IPR001623 -
Vian4g00128 150 PRINTS DnaJ domain signature 43 58 IPR001623 -
Vian4g00128 150 Gene3D DnaJ domain 1 83 IPR036869 -
Vian4g00128 150 Pfam DnaJ domain 23 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00128 Vian-Chr4 1183822 1184274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00128 24 84 C2H2 Transcription Factor Family AT1G74250 40.299 1.98e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00128 K09518 - vum:124826801 249.595