Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00114 ATGGCTCAAGAGGGAGGAAATGAAGCCATACCAAAATTCAAAGAGAGAAGCCCAATCCCAAAAGATTTCGATGAGAAGAGTTACAACCTCAGCGGAAAAATCATGCTTTCTGCCATCGTTCTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCCCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCACCGCCACCGCGAGCTCCGCCGAACACAGCTCGTCTTCTACAACGACGCCGGCACCCCCGCCGCGGTCTCCCGCGGCCTCGACGCTGCCGTCCTCGCCTCTCTACCGGTGTTCACGTACGACCCCAAGGCACACCCGGAAAACGCGCCCGAATGCGCGGTTTGTTTGTCTGAGTTCGAACTGGGAGAACCGGGTCGGGTCTTACCGAAGTGTAACCACAGCTTCCACACAGACTGCATCGATATGTGGTTTCACTCGCACGCCACGTGTCCGCTTTGTCGTGCGCCGGTCGAGCGCGCGGCCGAACCGGAGGTTGTTATAACTGTTAGCGAACCGGAATCCGGTTCGGGGGAGAACCTAACCGGTTCTACCTCTTGTCCTTCTTCTTCGGTTGGCTCTAGGAAATCGTCGTTGGTTGGTGTGACCGTTGAGGTGCCTCCGCGGGACGAGAATTTGCGTGACGAGAATACGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTATCGTTTACGAGGATTCTTAGCAGGGAACGGAGGGGAAACACGTCCCCGTCGTCTAGCGGCGGTGATTGTAGCTCCGCCGCCCAGTCCGAGGCCGAGCGAGTGAGCGAGAGGAGACCCAGTGAGTCTTGA 837 0.5759 MAQEGGNEAIPKFKERSPIPKDFDEKSYNLSGKIMLSAIVLLFFIVILMLCLHIYARWYLRRARRRQLHRHRELRRTQLVFYNDAGTPAAVSRGLDAAVLASLPVFTYDPKAHPENAPECAVCLSEFELGEPGRVLPKCNHSFHTDCIDMWFHSHATCPLCRAPVERAAEPEVVITVSEPESGSGENLTGSTSCPSSSVGSRKSSLVGVTVEVPPRDENLRDENTSSFRSPMSRMLSFTRILSRERRGNTSPSSSGGDCSSAAQSEAERVSERRPSES 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00114 278 MobiDBLite consensus disorder prediction 180 205 - -
Vian4g00114 278 SUPERFAMILY RING/U-box 101 166 - -
Vian4g00114 278 CDD RING-H2_EL5-like 119 162 - -
Vian4g00114 278 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 169 IPR044675 -
Vian4g00114 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 170 IPR013083 -
Vian4g00114 278 SMART ring_2 120 161 IPR001841 -
Vian4g00114 278 MobiDBLite consensus disorder prediction 177 278 - -
Vian4g00114 278 FunFam E3 ubiquitin-protein ligase ATL6 84 168 - -
Vian4g00114 278 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vian4g00114 278 Pfam Ring finger domain 119 162 IPR001841 -
Vian4g00114 278 MobiDBLite consensus disorder prediction 225 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00114 Vian-Chr4 1055202 1056038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00114 26 252 Rapid Response to Elicitors AT3G16720 53.516 5.28e-67 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00114 4 1055202 1056038 Vian4g00114 4 1055202 1056038 ECH
Vian1g00294 1 2613044 2613808 Vian4g00114 4 1055202 1056038 PCT