Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00104 ATGGCCACGGAGCAGTTGATGTCCAGTGGCGGTCCTCGCTACGTTCAGATGAAATCCTCGCCACCGCCGTCTCCGCCGGCTGCGACTGCCGAGGAGATGTCATCGGTTCCGTCGTTCCGGCACAGCGGCGCCGAGGCCAATCGGATTTTCGAGGAATTGCCGAAAGCCTCCATCGTCTCCGTGTCTCGCCCCGACGCCAGCGATATCAGCCCCATGCAACTCTCTTACACCATTCAGGTTCAGTACAGACAGTTCAAGTGGGAGTTAATGAAGAAAGCTCATCAAGTATTTATTTTGCATTTCGCATTAAAAAAACGTGCCTTCATTGAGGAAATCCATGAGAAGCAGGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACAATGCTATGGAGCAAGATGACGATGAAGGTGATGATGAAACAATCCCATTGCATACTGATGAAACTCATGAAAGTGCTAGGGACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATACGACCAGCCTTGGGAAGACAGCAGTCTATTGCAGAGAGGGCAAAGAGAGCAATGCAAGGATATTTGAATCACTTTTTGGGAAATATCAGTATTGTGAATTCTCATGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTGTCTTTTTCACCTGAATATGGCCCCAAGCTAAAGGAAGAATATGTGATGGTGAAACATTTGCCCAAAATCCTGAAGGATGATGACTCCAGAAAGTGTTGTTTGTCTGACTGTTTCAGTTGCTGTAATGACAACTGGCAAAAGGTATGGGCTGTACTGAAACCTGGATTTTTGGCATTGCTGGCAGATCCTTTTGATACACAGCCTCTGGACATAATTGTTTTTGATGTACTGCCAGCCTCGGATGGGAATGGGGATGGTCGTTTATCACTGGCAAGTGAAATGAAGGAACGGAATCCATTACGCCATTCGTTCAAGGTGGCTTGTGGAATCCGCAGTATCAGAATTAGAGTGAAAAGTAGAAGTAAAGTCAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCGGAAGGCTGGTGTCATCCTCACCGTTATGGTTCATTTGCTCCTCCAAGAGGCTTAATTGAAGATGGAAGTCAAGCCCAGTGGTTTATTGATGGGCGAGCAGCATTTGAGGCCATTGCTTCTGCAATCGAGGCTGCAAAATCAGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTTCACACTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGGAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTGGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAAAAACTTGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAACGTAGGAGATTTCCCTCCTCTAACCTGGCCGGGAAAAGACTATTATAACCCAAGAGAATCTGAACCAAATTCATGGGAAGATACAATGAAAGATGAATTGGATCGTGAGAAATATCCTCGTATGCCTTGGCACGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCAAAGAGGAACAAAGCTTTATATGAGGAAGCAATACCATTACTAATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCCGAGAGATACAGATTCAAAGTGGGAACATAGACAATCAAACAGTTCTTAAAAGAGAAGATTCTTTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTTTTGCCCCAGGAGTCTGATGGGTCGGATACTCATGAAGGAGACCAAAAGTTGAATGGTGTAATCTCCTCTTCACATTGCCTGGACAAGCCAAGAAGGATCAGCACTGGTCTTCCCTTTTCATTTCGCAAGGCTAAAATTGTAGCACTTGGTTCAGACACACCAATGAAGGGCTTTGTAGATGATCTGGATTCTGAGCATGATCGCGAGAAAATGTCTCTAGATAGAGTGGCTCATTCTGATTTGCAAAATACAGATCCAGAATGGTGGGAGACGCAAGAACGGGGTGACCAGGGAGGTTTTCCTGAGGAATCAGGACAAGTTGGTCCTCTTGCTTCCTGCCGTTGCCAAGTTATTAGGAGCGTGAGTCAATGGTCTGCGGGAACAAGTCAAACCGAAGAGAGCATCCATAGTGCTTATTGTTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGGGATGAGATGATACGCAATCGTGTGTTAGAAGCTTTGTACCGACGAATTATGCGAGCTTACAATGACAGAAAAACTTTCAGGGTTATAATTGTCATACCACTGCTGCCTGGCTTCCAGGGGGGCCTTGATGATAGTGGTGCAGCATCTGTAAGAGCCATAATGCACTGGCAGTATCGAACCATTTGCAGGGGGCAGAATTCTATCTTGCATAATCTTTATGAACTTCTTGGTCCTAAAATACACGACTACATCTCTTTCTATGGTCTAAGGTCTTATGGTAGACTTAATGGGGGTCCTATGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGACAGTATAACTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGCCGTAGTTATAGAAGACAGAGAGTTGATTGGTTCTTATATGGATGGAAAACCTTGGAAAGCTGGAAAGTTTTCCTTGACCCTTCGATTGTCCTTATGGTCTGAGCACTTGGGTCTCCCTACAGGAGAGGACAATCAAATAATGGACCCAGTTGTTGAATCTACTTACAAGGATATTTGGATGGCTACGGCAAAGACAAATACTACAATTTACCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGACATGCCTTCAGACAAAGTGTGCTTTTTTGGAAAGAAAGGATTGGTCACACGACCATTGATTTAGGAATAGCCCCAGAAAAATTGGAATCCTATCGTGATGGAGGCATTAAGAACACCGATCCCTTGGAGAGATTAGCATCAGTGAAGGGTCACCTGGTCTCTTTTCCCTTGGAGTTCATGTGTCAGGAAAGTCTGAGACCTGCTTTTAATGAAAGCGAATACTACGCTACTCAAGTTTTCCATTGA 3369 0.4375 MATEQLMSSGGPRYVQMKSSPPPSPPAATAEEMSSVPSFRHSGAEANRIFEELPKASIVSVSRPDASDISPMQLSYTIQVQYRQFKWELMKKAHQVFILHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHNAMEQDDDEGDDETIPLHTDETHESARDRDVPSSAALPIIRPALGRQQSIAERAKRAMQGYLNHFLGNISIVNSHEVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKILKDDDSRKCCLSDCFSCCNDNWQKVWAVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASEMKERNPLRHSFKVACGIRSIRIRVKSRSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFIDGRAAFEAIASAIEAAKSEIFICGWWLCPELYLRRPFHTHASSRLDNLLEGKAKQGVQIYILLYKEVALALKINSVYSKKKLLGIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSEHNVGDFPPLTWPGKDYYNPRESEPNSWEDTMKDELDREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKALYEEAIPLLMPQHHMVIPHYLGRSREIQIQSGNIDNQTVLKREDSFSSSSQDQDIPLLLPQESDGSDTHEGDQKLNGVISSSHCLDKPRRISTGLPFSFRKAKIVALGSDTPMKGFVDDLDSEHDREKMSLDRVAHSDLQNTDPEWWETQERGDQGGFPEESGQVGPLASCRCQVIRSVSQWSAGTSQTEESIHSAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYNDRKTFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGPKIHDYISFYGLRSYGRLNGGPMATSQVYVHSKIMIVDDSITLIGSANINDRSLLGSRDSEIAVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPTGEDNQIMDPVVESTYKDIWMATAKTNTTIYQDVFSCVPNDLIHTRHAFRQSVLFWKERIGHTTIDLGIAPEKLESYRDGGIKNTDPLERLASVKGHLVSFPLEFMCQESLRPAFNESEYYATQVFH 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00104 1122 Coils Coil 105 125 - -
Vian4g00104 1122 SMART pld_4 487 514 IPR001736 GO:0003824
Vian4g00104 1122 SMART pld_4 919 946 IPR001736 GO:0003824
Vian4g00104 1122 PANTHER PHOSPHOLIPASE D 166 1112 IPR015679 -
Vian4g00104 1122 MobiDBLite consensus disorder prediction 1 15 - -
Vian4g00104 1122 CDD PH_PLD 203 350 - -
Vian4g00104 1122 Gene3D Endonuclease Chain A 746 979 - -
Vian4g00104 1122 SUPERFAMILY Phospholipase D/nuclease 760 969 - -
Vian4g00104 1122 Gene3D Endonuclease Chain A 374 609 - -
Vian4g00104 1122 MobiDBLite consensus disorder prediction 637 652 - -
Vian4g00104 1122 PIRSF PLD_euk 614 1122 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vian4g00104 1122 PIRSF PLD_euk 29 625 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vian4g00104 1122 FunFam Phospholipase 754 973 - -
Vian4g00104 1122 SUPERFAMILY PH domain-like 258 350 - -
Vian4g00104 1122 CDD PLDc_vPLD1_2_yPLD_like_1 380 524 - -
Vian4g00104 1122 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 919 946 IPR001736 GO:0003824
Vian4g00104 1122 SUPERFAMILY Phospholipase D/nuclease 335 606 - -
Vian4g00104 1122 Gene3D - 255 352 IPR011993 -
Vian4g00104 1122 MobiDBLite consensus disorder prediction 637 670 - -
Vian4g00104 1122 CDD PLDc_vPLD1_2_yPLD_like_2 780 963 - -
Vian4g00104 1122 MobiDBLite consensus disorder prediction 1 38 - -
Vian4g00104 1122 MobiDBLite consensus disorder prediction 147 161 - -
Vian4g00104 1122 Pfam Phospholipase D Active site motif 487 514 IPR001736 GO:0003824
Vian4g00104 1122 MobiDBLite consensus disorder prediction 134 162 - -
Vian4g00104 1122 Pfam PLD-like domain 793 966 IPR025202 -
Vian4g00104 1122 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 487 514 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00104 Vian-Chr4 924733 935025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00104 1 998 Phospholipase D Gene Family (Wang group) AT3G16785 72.483 0.0 1396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00104 K01115 - gmx:100780514 2145.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00104 4 924733 935025 Vian4g00104 4 924733 935025 ECH