Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00101 ATGGGACAAGAATCAGATCACAAAACCCAGTTAGTGTTGGAGATTTGCTCCATTTCCACACGTTCACTTGGCTGTGTTCATACACTTCTCTCAAACCCTGCTAAGCCACCTTTCATAGATTGGTACTGCATTCTTGGAGTGGAAGAAAATGCAGGGTTGCTCACCATCCGCCAGCAATACCATAAACTTGCCCTGCAACTTCATCCGGACAAGAACAAACATCCAAAGGCTGAAATTGCTTTCAAACTTATATCTGAGGCATATATGTGTCTGTCTGATGCTGCAAAAAGGAAAGGTTTTGACTCAAAAAGATCTAAAAATTTCTGCTTTGAGTGCAATAGAATTCCATATACATCTAAAAAAGTCCCTGTCCCTGGCAATTCCAATGGGTCGACACGATCTTACAAAGTTCGGAGAAATATTAAAGAGATGAGAGAAATGTTGAAGGAGGAGGCTAAGGTTATAGAGAAGTGTCTCCGAGCAAATTTGATGTCAAAGAAAGAGTCTCCACTGTACAATCCTGCAGATTACAGACATGGAAGCAGATTTCTGCATAAAGTTGAGAGAGAAGTTCCTGTTTTCAATCCATTGAAATACTTGTACCAAGGATATCCTCATCTCAGAGATCATGTTCATCACAATTGGGAGACATGTTGGTACTTTGATACACAAAATCTTGTGCAGAATCACAAGGGAGAAGCTAAGTATGGTTCACCAGTGTTTGAGGTCAGATCACAGAATAGATTTCCTTATCAGCCATCATGA 765 0.4039 MGQESDHKTQLVLEICSISTRSLGCVHTLLSNPAKPPFIDWYCILGVEENAGLLTIRQQYHKLALQLHPDKNKHPKAEIAFKLISEAYMCLSDAAKRKGFDSKRSKNFCFECNRIPYTSKKVPVPGNSNGSTRSYKVRRNIKEMREMLKEEAKVIEKCLRANLMSKKESPLYNPADYRHGSRFLHKVEREVPVFNPLKYLYQGYPHLRDHVHHNWETCWYFDTQNLVQNHKGEAKYGSPVFEVRSQNRFPYQPS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00101 254 Gene3D DnaJ domain 39 157 IPR036869 -
Vian4g00101 254 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vian4g00101 254 PRINTS DnaJ domain signature 60 75 IPR001623 -
Vian4g00101 254 PRINTS DnaJ domain signature 42 60 IPR001623 -
Vian4g00101 254 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Vian4g00101 254 SUPERFAMILY Chaperone J-domain 31 104 IPR036869 -
Vian4g00101 254 PANTHER BNAC03G44070D PROTEIN 31 220 - -
Vian4g00101 254 SMART dnaj_3 39 96 IPR001623 -
Vian4g00101 254 CDD DnaJ 40 93 IPR001623 -
Vian4g00101 254 Pfam DnaJ domain 40 101 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00101 Vian-Chr4 905209 906211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00101 40 102 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 41.791 3.35e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00101 - - gmx:100778573 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00101 4 905209 906211 Vian4g00101 4 905209 906211 ECH
Vian1g00305 1 2689684 2690882 Vian4g00101 4 905209 906211 PCT