Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00090 ATGTCGGAAGGAACCAATTTGGTGCTGGAATCATCTGAAAATGGTACGGATTTGTCTCAGGAAGACATTGACACCATTGAGGAAACAGCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAGTGCGGCTTTTCAATTAGACGACACCGAACTCGAGGGAAAGATGGGGTTGGAAGGGGAGTTACAAGGAGGGATTTCACTTGCCATCGTGGTGGTTATCCCCAGATTAAACCTTCTCATGACGGAAAGGTGCAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACACACATAATCATGAGCTATTAAAATCCAATGAGGTGCGCCTTCTTCCAGCCTATTGTCCGATATCTCCTGATGACAAGAGTCGAATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGTTAAGACTGATGGAGCTGGAGAAAGGGGTCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACTTGCTGCAGTCTTTCAGAATTGTGGACAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCATAACTTCAAATATGAATTCAAAATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCCTACAGTTCATCCATTCAATCATATGAGGCATTTGGCGATGCTGTAGTTTTCGATACCACCTACCGAGTAGATGCTTATGACATGCTGTTGGGATGTTGGCTTGGTGTGGACAATAATGGCATGCCTTGTTTCTTTAGTTGCACACTTCTACGGGATGAAAACATACAATCTTTCTCATGGGCTCTCAAGGCTTTCTTGGGGTTCATGAAAGGAAAGGCTCCTCAAACAATATTGACGGATCACAACACTTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACCAAACATGCTTTTTGTATATGGCATATACTTTCCAAGTTCTCTGATTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGCTGGCGGCAAATGGTTGACAAGTATGGACTCCACACAAATAAACATATCATTAGCCTATATTCATTGAGGACATTTTGGGCTTTACCATTCTTGAGGCGCTACTTCTTTGCAGGATTGACCATTACATCTCAGTCTGAGTCCATAAATGCTTTCATCCAACGTTTCTTGAGTGCCCAATGTCAACTAGAACGCTTTGTGGAGCAAGTCTGTGATGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCGAAGCAAAAGATGCAAAGGAAACTTCAAAAAGCGTGCCTCAAAACTGGTTCACCTATTGAATCCCATGCTGCCACTGTACTTACTCCCTATGCCTTGAGTAAACTTCAGGAAGAGCTAGTTATGGCGCCACAATATGCATCCTTCCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGACAGATGGAGGATGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATAAGCTGCAGCTGTCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACATGTGCTACGTGTCATGTCAACTAATAACTGTTTCCACGTCCCTGATCAATATTTACCAGGTCGATGGCGAGGCACTGGTTCATCTTCTGTTAACCAATTCCGGGGTACCACTAGTAGGGATCAGCCTGAAAGGATGCAACTTTTGGAATCCATGGTTTCAACATTTATAGTGGAATCCATTGAAACTGATGAACGTCTGGATGTTGCTTGCGAGCAAATTTCCATGGTGCTATCACGCATCAAAACTCTTCCTAGGTCTCCACATGGGGTGAATGACATTGCATTTGGTTATCCATCAGATTCATTAATCCTCCCAGAGGTAGAAGATACTAATGGAATGATTCACAACTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTCAAGGAAAGAAGAGCCAGAGATGGAGTCGACCTCACAAGGAAGCGAAGACAGTTTTCTGCACCATTGTGTGCTCAATATGGACATGATCCATCTGATTGCTCAATAATGGCCACTGACAATATTAGTGGAGATGCATTAGGGTACTTGTAA 2286 0.4217 MSEGTNLVLESSENGTDLSQEDIDTIEETAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSHDGKVQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFRNTHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRIVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVDAYDMLLGCWLGVDNNGMPCFFSCTLLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVELPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHTNKHIISLYSLRTFWALPFLRRYFFAGLTITSQSESINAFIQRFLSAQCQLERFVEQVCDVADIVDFNDRAGAKQKMQRKLQKACLKTGSPIESHAATVLTPYALSKLQEELVMAPQYASFLVDEGCFQVRHHSQTDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHVPDQYLPGRWRGTGSSSVNQFRGTTSRDQPERMQLLESMVSTFIVESIETDERLDVACEQISMVLSRIKTLPRSPHGVNDIAFGYPSDSLILPEVEDTNGMIHNFTITNPHDSITTGKLKERRARDGVDLTRKRRQFSAPLCAQYGHDPSDCSIMATDNISGDALGYL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00090 761 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Vian4g00090 761 Pfam SWIM zinc finger 562 587 IPR007527 GO:0008270
Vian4g00090 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 608 IPR031052 GO:0006355
Vian4g00090 761 Pfam MULE transposase domain 275 367 IPR018289 -
Vian4g00090 761 ProSiteProfiles Zinc finger SWIM-type profile. 557 590 IPR007527 GO:0008270
Vian4g00090 761 SMART 26again6 565 592 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00090 Vian-Chr4 836995 839899 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian4g00090 MULE 2.9e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00090 - - vum:124836934 1558.89