Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00089 ATGAATCTCGGCAGCGGCAAGGGATCAACTTCCAGTTCTCCTCTGAAAACCGGGGATGTTGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTGATGGTGGTGGATGATGATCCCACTTGCCTTAGGATACTTGAGAGGATGCTGCGTGCCTGTCTCTATGAAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAACGGGTTTGACATTGTTTTGAGCGATGTGCATATGCCAGACATGGATGGATTCAAGCTTCTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCTGCTGATGATGGAAAAAGCGTTGTGATGAAAGGGGTGACACACGGTGCCTGTGATTATCTGATTAAACCTGTGAGAATTGAGGCTTTGAAGAACATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGGTTGAAAGATGCAGAGCAATCGGGTAGTGTGGAGGAAGGAGATCGGCTTCTAAAAGGGTGTGACGATGGAGATTATTCATCTTCAGTGAATGAAGGCAAAGGCTCAAAGAAGAGGAGGGATGAGGAGGAAGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTTATGGCTTCTGTGAATCAACTTGGAATTGATAAGGCAGTTCCTAAGAAGATTCTGGAGTTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGACTGAGTGGAGTTTCACTGCAGCAGGGCAACTTGACCAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGGCAACCTCAATCAATGGAATTGATCTTCAAACTCTTTCAGTTGCCGGTCAGCTTCCAGCTCAAAGTCTAGCCAAGCTTCAAGCCGCGGCACTTGGCAGGACAACTGCTAAAGCTGGTGTGTCTATGCCTCTATCTGATCAAAAGAACCTTTTCAGTTTTGAGAGCCCAAGATTAAGATTTGCAGAAGGGTCACTGCATCATTTAAGCAACAGTAAACCAATGAACCTGCTTCATGGCATTCCTACCAACATGGAGCCGAAACAGCTTGTCACTCTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAGTACTCCTGCTGCACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATTCTAAGTGAAAATGCTGATTCTCATGCAACCAGGTTTCCATCATCTTTGGTTCAGCCTATAGTACCAAATAGTATTTCTAATGGTGTTTTGGGAAATAGAATTACTGGCTCCAGCAACATAACTAGTGCTTATAATACAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATCAACCAAACCAATGAAATGCCTGTCGGTAATTTTCCTCTTAGAAGCACTCCAGGTATAACTAGTATCCCGACTAAAGCCATGTTTCATGAAGAAGGTACCTCAGGCATTACAGGACCTGGTGGATTTGTTTCAAGTTATGATATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAGCACGGGCATAACATATGATTCTTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTCCCTGCTTGCAACAGTCTGTGCAAACTAGAGATTCCACTTCAATTGGAAAACCTCTGTTCTCCACTGGGGAAGCCATACATCAGAGTAATCTCCAAAATGTTAGTCAACAACACCTCAATAACCTTGTTGACAGTTCAGTAAGGGTTAAGGCTGAAACATTTCCTGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGATCAGTACGGTCAGGAGGATCTTGTCACTGCATTTCTGAAACAGCAAGAAGGTGTAGGACCATCTGATCACGATTTAGACTTTGATGGATATTCCTTAGACAACATTCCGGTTTAG 2022 0.4451 MNLGSGKGSTSSSPLKTGDVVSDQFPAGLRVMVVDDDPTCLRILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDAEQSGSVEEGDRLLKGCDDGDYSSSVNEGKGSKKRRDEEEEGDERDDSSTLKKPRVVWSVELHQQFMASVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSLQQGNLTNSFISSQEATFGATSINGIDLQTLSVAGQLPAQSLAKLQAAALGRTTAKAGVSMPLSDQKNLFSFESPRLRFAEGSLHHLSNSKPMNLLHGIPTNMEPKQLVTLHQSTQTLGNLNMRVSTPAAQNNPLLMQMAQSQPRGQILSENADSHATRFPSSLVQPIVPNSISNGVLGNRITGSSNITSAYNTVPQNSSLLSFPINQTNEMPVGNFPLRSTPGITSIPTKAMFHEEGTSGITGPGGFVSSYDMFNELHHQKSHDWDLTSTGITYDSSQHANPLQGNIDVSPSVLVHQGFPCLQQSVQTRDSTSIGKPLFSTGEAIHQSNLQNVSQQHLNNLVDSSVRVKAETFPDPSSQINNLFSDQYGQEDLVTAFLKQQEGVGPSDHDLDFDGYSLDNIPV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00089 673 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Vian4g00089 673 MobiDBLite consensus disorder prediction 152 172 - -
Vian4g00089 673 MobiDBLite consensus disorder prediction 152 204 - -
Vian4g00089 673 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Vian4g00089 673 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Vian4g00089 673 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Vian4g00089 673 PIRSF RR_ARR_type-B 6 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vian4g00089 673 MobiDBLite consensus disorder prediction 182 204 - -
Vian4g00089 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Vian4g00089 673 Gene3D - 204 266 - -
Vian4g00089 673 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Vian4g00089 673 CDD REC_typeB_ARR-like 31 145 - -
Vian4g00089 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 352 IPR045279 GO:0009736
Vian4g00089 673 SMART REC_2 29 141 IPR001789 GO:0000160
Vian4g00089 673 Gene3D - 29 161 - -
Vian4g00089 673 FunFam Two-component response regulator 203 266 - -
Vian4g00089 673 SUPERFAMILY CheY-like 28 149 IPR011006 -
Vian4g00089 673 FunFam Two-component response regulator 29 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00089 Vian-Chr4 822860 826165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00089 63 673 Response Regulator Gene Family AT3G16857 49.080 1.68e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian4g00089 Response_reg 2.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00089 - K14491 gmx:100781087 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00089 4 822860 826165 Vian4g00089 4 822860 826165 ECH
Vian1g00315 1 2800725 2803948 Vian4g00089 4 822860 826165 PCT