Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00088 ATGTCCATGCATGTCCACGTCTTCGTCTTCTTAACGCTTGCCATCTTTTCGGCAACGCCGTCGATGTCTCAGTCGCAAACCGCAGCTTCCTGCAATGGAATATTCGTCTCCTACGTCTACACCGGCGGCGAGCGGCTGCCGCCGAACGTTTCCGACGCGACGCAGCAGCCTTACCGGTTCGAGTCGAGGCTGACAGTGCTGAACAACGGGTTGGAGGAGCTGAAGTCTTGGAAGGTGTTCGTGGGGTTTCAGCACGGCGAGTGGTTGGTTTCCGCGTCGAACGCCGTGCTCGCGGACGGTACAAGTATTCCCGGTGCGGTTGGGAACGGCACCGTGTTGAGCGGGTCGTCGGTGAAGGATCTGAAGACGGCGGTGGCGACCGCCGGCGACTTGACCCAGATGCAGGTTCAGGTGGAGATGGTGGGGAGCCTTCTTGGGGTGGCACCACCTTCTGTGCCGATGCCTCGGTCGGTTACTTTGGCTAACGATGGATTCGTCTGTGGTCAACCCTCTGGAGAAGGGAGCAATGAAACGCATGTGTGTTGCAGAAGTGATCCCAGTTCCAGAACAAACGTGAGCACAGAGGTAGAGTTTCTTCCCCGTGAGAAGGGTGATCTTAGCATCACATACGACATCATCAGAACCTACGATTCCAATTACTGGGCAGAGGTTACAATCGCAAACGACAACCCTTTGGGCCGTCTCGACAACTGGAGACTAAGCTGGGACTGGCAAAACGACGAGTTCATCTACACGACAAAGGGTGCATATCCATTAAAAGTGGATTCCTCCGACTGTGTTTTCGGTTCTCAAGGTAGTTTCTACAAGGAACTAGACTTTGCTAACGTCTTGAACTGTGAAAGAAGGCCAACCATAGTGGATCTTCCTCCCTCAAGGTTCAACGATTCAGAACTCGGTCAAATCCCATTCTGCTGCAGGAATGGCACCATCTTGCCACCAACAATGGACCCTAGCATGTCAACTTCAAGGTTCCAAATTCAAGTCTTCAAAATGCCACCCAACCTTAACCGCTCCACGCTCACACCTCCTCGTAACTGGGAGATAAAGGGTACCTTTAACCCTAACTATGAATGCGGCAACCCTATCAGGGTTAGTCCAACTGAATCCCCTGACCTCACTCACCCTCCATCAAACAAATCATCAATTGCAACTTGGCAAGTGGTCTGCAACATCACAAACACAGAACGTGAAACTCGCAAGTGCTGCGTTTCTTTCTCAGCTTATTACAATGAATCGGTTATCCCATGCAACACGTGTGCATGTGGATGTCCAAGTAATCCGGAGAGAACATGCAGCGCAGCTTCACAAGCTATGTTGCTTCCACCGGAGGCACTTCTTGTCCCTTTTGAGAACCGAACTAAGAAGGCCGTTCCTTGGGCTGAGATTAAACATTTACCTGTGCCTAATCCCATGCCTTGTGGTGACAACTGTGGTGTGAGCATAAACTGGCACGTGGCCACGGATTACCGCAAAGGTTGGACCGCGAGGGTGACACTTTTCAACTGGGGTGACACCAGTTTTGCTGACTGGTTTGCTGCAGTGGAAATGGACAAAGCTGCGAAGGGGTTTGAGGAAGTGTACTCGTTCAACGGAAGCCTTTTGGAGAGTGTGGAGAACACGATCTTCATGCAAGGGAAAGAGGGGTTGAATTTTCTTGTGGCGGAAACTGATGGATCTAACCCTCGGAAAGATCCTAGGGTGCCGGGGAAACAGCAATCGGTGATCTCGTTTACGAAGAAGGAGACCCCTGGAATCAATGTGGTTGGTGGTGATGCGTTTCCAAGTAAAGTGTTCTTCAATGGGGAAGAATGTTCTCTTCCTTCGGTGTTACCAAGCAGTGTTGCGAGAACGGAGGTTCCATTGGCTACTATGATGTTCTTACTGATGTTGTTGTCGGTCTTCTTCATGTCGCAATAG 1938 0.5108 MSMHVHVFVFLTLAIFSATPSMSQSQTAASCNGIFVSYVYTGGERLPPNVSDATQQPYRFESRLTVLNNGLEELKSWKVFVGFQHGEWLVSASNAVLADGTSIPGAVGNGTVLSGSSVKDLKTAVATAGDLTQMQVQVEMVGSLLGVAPPSVPMPRSVTLANDGFVCGQPSGEGSNETHVCCRSDPSSRTNVSTEVEFLPREKGDLSITYDIIRTYDSNYWAEVTIANDNPLGRLDNWRLSWDWQNDEFIYTTKGAYPLKVDSSDCVFGSQGSFYKELDFANVLNCERRPTIVDLPPSRFNDSELGQIPFCCRNGTILPPTMDPSMSTSRFQIQVFKMPPNLNRSTLTPPRNWEIKGTFNPNYECGNPIRVSPTESPDLTHPPSNKSSIATWQVVCNITNTERETRKCCVSFSAYYNESVIPCNTCACGCPSNPERTCSAASQAMLLPPEALLVPFENRTKKAVPWAEIKHLPVPNPMPCGDNCGVSINWHVATDYRKGWTARVTLFNWGDTSFADWFAAVEMDKAAKGFEEVYSFNGSLLESVENTIFMQGKEGLNFLVAETDGSNPRKDPRVPGKQQSVISFTKKETPGINVVGGDAFPSKVFFNGEECSLPSVLPSSVARTEVPLATMMFLLMLLSVFFMSQ 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00088 645 SUPERFAMILY Carbohydrate-binding domain 202 251 IPR008965 GO:0030246
Vian4g00088 645 PANTHER COBRA-LIKE PROTEIN 7 22 643 - -
Vian4g00088 645 Pfam COBRA-like protein 220 399 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00088 Vian-Chr4 819822 822018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00088 31 626 COBRA Gene Family AT4G16120 63.228 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00088 - - vum:124836920 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00088 4 819822 822018 Vian4g00088 4 819822 822018 ECH
Vian1g00316 1 2806973 2809101 Vian4g00088 4 819822 822018 PCT