Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00084 ATGAGTGGTGCATCAGAAAACCCTATTCATGACAGTACAGAAGGTAAGGCTTCTTCTTCTTCATCAACAACGTTGAAACTCTTTGGTTTTCCATTAACCCCACCAGGTTACAGAGAGATTCACGTGGTGGCAGCAAGCACCGCCGTTTCTCCTCCTCATTGCCCTTACAAGAGATTCAAGTGTCACTTCTGCTACCGTGAATTCGCCAATTCACAAGCTCTCGGTGGCCACCAAAACGCTCACAAGAGAGAACGCCAGAAAGCTGCTCTCTCACCCTTCGGTTACTTTCGCTACCATCAACGGCTCGTACCACCGGGTCATTCTCCGATCGTGGTCCCGCAAGGAGGATCAAGGCCGTTGGTTGGTCCACGTGACCGGGCTCAGCCACCGTGGCTCTCGTGGGACACTGATGAGAGAGCTTATCATAGGGTTGGGTTAGTGAGGCCAATGGGTGCAAGTGCAATTAGCATTGGCACAGTGAGAGAAGTACACAATATTATTGATGATGGTGATGGGACAAGGAATTTGGCAGGTGTAAGAGAAGTTGAATATGGACCAAAACCTTCCCAGTACTACTTTTGTGCTTATCACTTTCACTGCCCTTACAAGATAGGGATGTTTTGGCTTGGCTCCTAA 636 0.489 MSGASENPIHDSTEGKASSSSSTTLKLFGFPLTPPGYREIHVVAASTAVSPPHCPYKRFKCHFCYREFANSQALGGHQNAHKRERQKAALSPFGYFRYHQRLVPPGHSPIVVPQGGSRPLVGPRDRAQPPWLSWDTDERAYHRVGLVRPMGASAISIGTVREVHNIIDDGDGTRNLAGVREVEYGPKPSQYYFCAYHFHCPYKIGMFWLGS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00084 211 Gene3D Classic Zinc Finger 43 92 - -
Vian4g00084 211 PANTHER ZINC FINGER PROTEIN 5 14 88 IPR044299 GO:0010090
Vian4g00084 211 SUPERFAMILY beta-beta-alpha zinc fingers 57 86 IPR036236 -
Vian4g00084 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Vian4g00084 211 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Vian4g00084 211 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00084 Vian-Chr4 776453 777188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00084 57 88 C2H2 Transcription Factor Family AT5G06650 78.125 6.45e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00084 - - vun:114162545 289.271