Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00078 ATGATACAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGTCTCTGACCCTGCGGCATCTTGGGTTCTAGCAGAAGACTTAGATTCTGGGGCGAAAAGTGCTTTCAGTGCTGAGCTTAATGACAATTTAACAGTTAAAAGTTATGAAGAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTTGTTTCAAATGTCAACACTTCTACTACATCTAATGGAGGCAATGTTTTACATTCATATCAACAAAATCAAAGTTTACTTAGTGGAAGCTTTGACAATGTATCTGGTACTCCTTCGGCAGAAGTTCCTTCTTTAGGCTTGCAAAGTCAGGACAGCTTTGGAACGTGGATGAACATCATGTCAGATGCACCATGTTCCATAGACGAGTCAGCTCTCGCAACATCAATTTCTACTGTTCGTGAACCATATTTATCACTGGTGGCTGATAATCAGCTATCTTCTTTGCCTGAACAAGTATTTAATCTCACAGAAGTGTCCCCTGCTTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGATAACTGGATATTTTCATAGTGACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTCGGGGTTTACCGATGCTGGGTGCCACCACACTCCCCAGGATTGGTCAATATCTATTTGAGCTTTGATGGCCACAAGCCTATTAGCCATGTTGTTAATTTTGAGTATCGTACTCCCATTCTGCATGATCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACCGACAAGATCCTTGATATTTTCTCAAATACAGTATCACCAAATGCTCTGAAAGAGGCTAGCAGATTTTCCATCAAAACATCATTTATCTCCAAAAGCTGGCAATTCTTGATGAAGTCAATTGACGAGCAAACAACTCCATTTCCACAAGTAAAAGATAGCTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTAGAACGAATTGTTGTAGGCAGCAAGAGTACTGAATATGATGCACAAGGGCAAGGTGTACTTCATTTGTGTGCAATGCTTGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTGTCACTAGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCTTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCCGCTGGGGCAAGGCCAAACCTGGTCACAGATCCTACTCCGAAAAATCCTGGTGGGTGTACTGCTGCTGATCTTGCTTATACGAAGGGCTATGATGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCACACTGGACACTAGCTCAACTGATGTAGTAAACACTCAAGAACTTACTGAGGACCAGCTCTACTTAAAGGAGACATTGGCAGCTTACCGTACCGCTGCTGGGGCAGCTGCACGCATTCAAGCTGCATATAAGGAGCATGAGCTAAATCTACGATACAAGGCTGTTGAATTAAACACCCCAGAGCATCAAGCACGTCGTATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAAGTATGAGACAAAGAAATCAAATGCAGCTGCTGTTCGAATTCAGCATAGATTCCGGACACGGAAAATCCGTAGAGAATTTCTTAATATGCGGCGTCAGGCTATTAAAATCCAAGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATAAAAAGATCATATGGTCTGTTGGGGTGTTAGAGAAAGCAATTCTGCGATGGCGGTTAAAGAGGAAAGGCTTTCGAGGTCTCCAGGTTAATTCTGCTGAGGATGGGGAGCAGGAAGACGGTGTAGAGGAGGAATTCTTCAGGACTGGCCTGAAACAAGCCGAAGAACGTGTCGAGAGGTCGGTCGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCTCAAGAAGAATACAGAAGAATGAAGCTAGCATATAGTCAAGCAAAGATGGATCTGGAATTTGAAGATTTCCTCACTTCTGAAGTTGACATGTTAACTGACATATAG 2166 0.4238 MIQIQLQSSPVTPVNSNSSSVSDPAASWVLAEDLDSGAKSAFSAELNDNLTVKSYEEKLHEINTLEWDDLVVSNVNTSTTSNGGNVLHSYQQNQSLLSGSFDNVSGTPSAEVPSLGLQSQDSFGTWMNIMSDAPCSIDESALATSISTVREPYLSLVADNQLSSLPEQVFNLTEVSPAWASSTEKTKVLITGYFHSDYQHLAKFNLVCVCGDVSFPVEIVQVGVYRCWVPPHSPGLVNIYLSFDGHKPISHVVNFEYRTPILHDPTASMEEKYNWNEFRLQMRLAHLLFSTDKILDIFSNTVSPNALKEASRFSIKTSFISKSWQFLMKSIDEQTTPFPQVKDSLFEIALKNKLKEWLLERIVVGSKSTEYDAQGQGVLHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARPNLVTDPTPKNPGGCTAADLAYTKGYDGLAAYLSEKSLVEQFNDMSLAGNISGTLDTSSTDVVNTQELTEDQLYLKETLAAYRTAAGAAARIQAAYKEHELNLRYKAVELNTPEHQARRIVAAMKIQHAFRKYETKKSNAAAVRIQHRFRTRKIRREFLNMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSAEDGEQEDGVEEEFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAYSQAKMDLEFEDFLTSEVDMLTDI 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00078 721 ProSiteProfiles IQ motif profile. 571 600 IPR000048 GO:0005515
Vian4g00078 721 Pfam Ankyrin repeats (3 copies) 349 436 IPR002110 GO:0005515
Vian4g00078 721 SMART iq_5 670 692 IPR000048 GO:0005515
Vian4g00078 721 SMART iq_5 593 615 IPR000048 GO:0005515
Vian4g00078 721 SMART iq_5 570 592 IPR000048 GO:0005515
Vian4g00078 721 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 66 701 - -
Vian4g00078 721 MobiDBLite consensus disorder prediction 1 22 - -
Vian4g00078 721 Gene3D - 568 618 - -
Vian4g00078 721 ProSiteProfiles Ankyrin repeat profile. 407 439 IPR002110 GO:0005515
Vian4g00078 721 FunFam Calmodulin-binding transcription activator 5 166 262 - -
Vian4g00078 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 697 IPR027417 -
Vian4g00078 721 SUPERFAMILY E set domains 171 258 IPR014756 -
Vian4g00078 721 Gene3D - 335 476 IPR036770 -
Vian4g00078 721 Gene3D Immunoglobulins 166 261 IPR013783 -
Vian4g00078 721 ProSiteProfiles Ankyrin repeat region circular profile. 407 435 - -
Vian4g00078 721 SUPERFAMILY Ankyrin repeat 348 469 IPR036770 -
Vian4g00078 721 ProSiteProfiles IQ motif profile. 594 618 IPR000048 GO:0005515
Vian4g00078 721 ProSiteProfiles IQ motif profile. 672 700 IPR000048 GO:0005515
Vian4g00078 721 FunFam calmodulin-binding transcription activator 5 337 477 - -
Vian4g00078 721 SMART ANK_2a 446 477 IPR002110 GO:0005515
Vian4g00078 721 SMART ANK_2a 407 436 IPR002110 GO:0005515
Vian4g00078 721 Pfam IQ calmodulin-binding motif 596 615 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00078 Vian-Chr4 699077 703572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00078 7 704 CAMTA Transcription Factor Family AT3G16940 51.763 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00078 K21596 - gmx:100819198 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00078 4 699077 703572 Vian4g00078 4 699077 703572 ECH
Vian1g00326 1 2920726 2928541 Vian4g00078 4 699077 703572 PCT