LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00058	ATGAGTTTCAAGGTAGCAAAAGGTGGTGTCGTGGTTGGGAAATACGAGTTGGGAAAAACCATTGGAGAAGGAAGCTTTGCGAAGGTGAAGTTCGCCAGAGATGTCAACAACGGCAACAACGTTGCCATCAAAATCCTCGACCGCAAACATGTCCTCCGCCACAACATGATGGAACAGCTGCAGCGAGAAATATCCACCATGAGACTCATCAATCACCCAAATGTTACTAAAATATTTGAGGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGGTTGAGTACATACACGCAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGATATTTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCGCCAACTCATATGGCTCTGTTCAAGAAAATTATCAAGGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCTGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATGGATGATGTAACCTTCGCTTTCAACGAGTCTAACAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCGATTGAAATTATGCACAAAATTGAAGAAGCAGCCAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAACTTCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGGCATGTGAAAGTTCCTACTCTTTGCTTCAGATCCAGAATTCAAGACCCAATTTTTCAAAATCTGGAATCCAAATTCAACTTATTATTTGGGTTTCTTACCGAAGCTGA	1281	0.4184	MSFKVAKGGVVVGKYELGKTIGEGSFAKVKFARDVNNGNNVAIKILDRKHVLRHNMMEQLQREISTMRLINHPNVTKIFEAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKIIKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSMDDVTFAFNESNKNLVTERKVKPVYMNAFELISRSQSFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKACESSYSLLQIQNSRPNFSKSGIQIQLIIWVSYRS	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00058	426	ProSiteProfiles	NAF domain profile.	281	305	IPR018451	GO:0007165
	Vian4g00058	426	CDD	CIPK_C	287	395	-	-
	Vian4g00058	426	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	110	122	IPR008271	GO:0004672\|GO:0006468
	Vian4g00058	426	Pfam	Protein kinase domain	83	244	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00058	426	Pfam	Protein kinase domain	15	82	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00058	426	ProSiteProfiles	Protein kinase domain profile.	15	244	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00058	426	FunFam	Non-specific serine/threonine protein kinase	280	402	-	-
	Vian4g00058	426	SMART	serkin_6	15	244	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00058	426	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	11	396	-	-
	Vian4g00058	426	SUPERFAMILY	Protein kinase-like (PK-like)	11	267	IPR011009	-
	Vian4g00058	426	Pfam	NAF domain	283	342	IPR004041	GO:0007165
	Vian4g00058	426	Gene3D	Transferase(Phosphotransferase) domain 1	84	269	-	-
	Vian4g00058	426	FunFam	Non-specific serine/threonine protein kinase	75	251	-	-
	Vian4g00058	426	Gene3D	Phosphorylase Kinase; domain 1	3	83	-	-
	Vian4g00058	426	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Vian4g00058	426	Gene3D	Kinase associated domain 1, KA1	280	402	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00058	Vian-Chr4	521771	525337	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00058	12	397	CBL-interacting serine-threonine protein kinases	AT1G01140	64.649	0.0	556

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vian4g00058		Pkinase	1.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00058	-		-	gmx:100777218	654.44