Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00050 ATGTCTGAAAAGGAGGTGGAAGACTATGATGGAGAATGTGTGAAAATGTCTGTCGGCGAAACTGCTTGCTCATACGCATCTATCATCCTTCACGATGAAGGAATCGCCGTCACTGTATCCTTTTGTGTTCTCATAGTCGAATCTTACTGGCCTACCTTGTTTGCTAAACTTGCCGAGAAGAAAAATCTTGGCGATTTGATTGCAAATGCTGCAGGCGGTGGGGCACCAGCCGCTGTTGCAGCTGCCCCAGTTGCTGCCGCAGGTGGAGGTGCAGCTGCGGCCGCCCCTGCCGCTGAGGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGACGATGATATGGGATTCGGCTTGTTCGATTAG 363 0.5041 MSEKEVEDYDGECVKMSVGETACSYASIILHDEGIAVTVSFCVLIVESYWPTLFAKLAEKKNLGDLIANAAGGGAPAAVAAAPVAAAGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00050 120 Gene3D - 16 70 IPR038716 -
Vian4g00050 120 Hamap 50S ribosomal protein L12 [rpl12]. 21 120 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vian4g00050 120 MobiDBLite consensus disorder prediction 105 120 - -
Vian4g00050 120 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 16 120 - -
Vian4g00050 120 CDD Ribosomal_P1 20 119 - -
Vian4g00050 120 Pfam 60s Acidic ribosomal protein 46 119 - -
Vian4g00050 120 MobiDBLite consensus disorder prediction 94 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00050 16 120 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 49.123 5.26e-28 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00050 K02942 - gmx:100791962 106.301