Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00047 ATGGCTCCTAATACCATTTTCTTGCTCTCCTTCACATCTTCCTCCTTACCCACACCCTTATTCAACCACCATCTCCACACCCAATTCAGATCTTCCCGCAAACCATTCGTTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGGCGGCCACGGTGGATAAAGGAAGGGTCGTTCACGGAGGACAAAACGCGGAGGAAGAAACGTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGTACAACATCTACTTCATATGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTGCCGCAGTGAGGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTGACTCCGCAAAAAAGGCAATTGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGAGGAATCTTGACACGATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATGCCTGAAGACCTGAGGCAGCTTTTTGGTAGATTTGGTAATGTGACCAGTGTAAGGGTGTTGCAAGATACGAGACAAGGAAAACAAAGGGTTTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAACGAAATGCTGCACTATCTCTCAATGGAACGGTATATATATGCATTCTATCTCTGCCGCTTTTCATTGTTGTGCTTCTTATTCATGAGCTAATGTCTGATACCTGGTCTGGTCTTTCTTGCAGTGATAGTTGCAATTTTGATTGTTTGGGAGGAAGCTCTGGTCTGGTATCCATAACTGAGATTGATGGGAGAACTTGA 900 0.4544 MAPNTIFLLSFTSSSLPTPLFNHHLHTQFRSSRKPFVSFSKATTFSFTASAATVDKGRVVHGGQNAEEETFKQPRPTEVYICNLPRSCDVQHLLHMFNPHGTVLSAQVCRSEETGESRGSAYVTMASIDSAKKAIEALDASDVGGREVLVRFSAEMNPKRRRNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTMPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGTVYICILSLPLFIVVLLIHELMSDTWSGLSCSDSCNFDCLGGSSGLVSITEIDGRT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00047 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 244 IPR000504 GO:0003723
Vian4g00047 299 PANTHER OS02G0815200 PROTEIN 16 244 - -
Vian4g00047 299 SUPERFAMILY RNA-binding domain, RBD 176 245 IPR035979 GO:0003676
Vian4g00047 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Vian4g00047 299 Gene3D - 48 167 IPR012677 -
Vian4g00047 299 Gene3D - 173 247 IPR012677 -
Vian4g00047 299 SUPERFAMILY RNA-binding domain, RBD 69 165 IPR035979 GO:0003676
Vian4g00047 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Vian4g00047 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 245 IPR000504 GO:0003723
Vian4g00047 299 SMART rrm1_1 182 257 IPR000504 GO:0003723
Vian4g00047 299 SMART rrm1_1 78 151 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00047 Vian-Chr4 452022 453367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00047 30 258 Eukaryotic Initiation Factors Gene Family AT1G22760 28.916 3.71e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00047 - - pvu:PHAVU_009G258000g 409.838