Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00044 ATGGGTGAAGTGGCGGGTGAGAAGGGTGTGATGCAGACTCAGGAGGAACAGAGCAACAATGGCTCCATGGTTCGGTGGGAACGTTTTCTGCCTCGGATGGTGCTTCGGGTGTTGCTTGTGGAAGCTGATGATTCGACTCGACAGATCATTGCTGCGCTTCTCCGTAAATGCAGTTACAAAGTTGCCACAGCTTGTGATGGCCTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATTTGCCATCAATATCTGGATTTTCACTTCTTAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCACGATTCAGTTAGCATGGTGTTCAGATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGTTAAGAAACTTGTGGCAGCATGTGTGGAGAAGGCATGTCATGGAACTTGGTTTTGCTGCAGAAAATCATGCTGCTAGCAATGATTCTAGCGGTTCTGTGGCTTCTACACCAAAAAATAATGAATGCAGCGAGAAAACAAGTGAGATTCAAGATATTTCACAGCTGAAGAGTTCTTCAAATTTGAGCGATATTGGCACAATTAAGCATGACAACTCTACAAAATGTGAAAGGGAATCAGATAAGCATAATGACAAAGCTGGAGCCAAATCAATATTTATATCAGAAGATGAAGGGTCCAACAAAACTTTTAAACCAACAGGCTTAAGGCCAGGTCAAGGATATGATTTTGGTGAAATGAGAAATCAGGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTGCAATTAGTGTTGATATTCGTGGAAGCAGTGATGAATTGGAAGGTCCGTCTACTGGGGCCATTGACTTGATTGGTACATTCAAGACACTTCCAGAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACGTTTCCAAGTTTGACTTTGATACACAACTGGAACTTTCTATAAGAAGATATTTTCCTGGAGGCTCGTACAAAGCTGTATTTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTAGTAGTAAATTGTTGCAGCCCCTTTGTCCAACACCATCAACTATCTCTGCAAAATTAACAAACGTTAGTCATGATTCTCAGAAATCTCCTAAGTTATTTGAAAACGCTACTACTTCTCATCAATGTGGTGCAAAAGATCAAATTAAGGATAAAATCACCACTCCAGATATTGGTCAATCTGGACAAGTTGATCCAAAATTACCGAACAGTCAAGTTGGATTCTTTCCTGCTGCAGGGGTTACTTATGATCACAAGTCAACTGGAAATGGAAATGTCTTCCCTTCTATGCTTTATTCTCAATCAGATGTCCATACCATATGGACTCCAAAATCATTGTTCCAGAAAGAGAGTTCTCCGTTTCCCACTAGTACTTCCTCCCAGTCTAATCCTCAAAGTCTCAACTCAAAACATCATCACTGCTCTGACGATGCAACCCATAATTCAATTCAAAATGTAAATCACCAAAGCCATTTGGATTTTGAGACACAGGACTCTCCTGCTGCTAGTGAGACTGCTGATACTGCCCTTTACCATGATACAACAAATCATAATTGTAGTGGTGTATACAGAAGCATAGGCTGCACAAGTGATGGAAATACTACTTCAGCCAAGGTAGCCAAGGACAACCACGAAAGTTTCACTGATATTGGTCACCTTAGTCATGATGGATACATAGGGACAGATTCTCATCGCACCAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTTAAGCGGAAAGACATGCTATGA 1860 0.4081 MGEVAGEKGVMQTQEEQSNNGSMVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVATACDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVSMVFRCMLKGAADFLIKPVRKNELRNLWQHVWRRHVMELGFAAENHAASNDSSGSVASTPKNNECSEKTSEIQDISQLKSSSNLSDIGTIKHDNSTKCERESDKHNDKAGAKSIFISEDEGSNKTFKPTGLRPGQGYDFGEMRNQDEVLRIELSKANPAISVDIRGSSDELEGPSTGAIDLIGTFKTLPESTDEKCSFSSGNVSKFDFDTQLELSIRRYFPGGSYKAVFEERQILNHSNASAFSRYGSSKLLQPLCPTPSTISAKLTNVSHDSQKSPKLFENATTSHQCGAKDQIKDKITTPDIGQSGQVDPKLPNSQVGFFPAAGVTYDHKSTGNGNVFPSMLYSQSDVHTIWTPKSLFQKESSPFPTSTSSQSNPQSLNSKHHHCSDDATHNSIQNVNHQSHLDFETQDSPAASETADTALYHDTTNHNCSGVYRSIGCTSDGNTTSAKVAKDNHESFTDIGHLSHDGYIGTDSHRTSQREAALTKFRLKRKDML 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00044 619 CDD psREC_PRR 37 140 - -
Vian4g00044 619 MobiDBLite consensus disorder prediction 484 515 - -
Vian4g00044 619 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Vian4g00044 619 SUPERFAMILY CheY-like 35 163 IPR011006 -
Vian4g00044 619 MobiDBLite consensus disorder prediction 214 236 - -
Vian4g00044 619 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 387 IPR045279 GO:0009736
Vian4g00044 619 MobiDBLite consensus disorder prediction 170 237 - -
Vian4g00044 619 SMART REC_2 35 150 IPR001789 GO:0000160
Vian4g00044 619 MobiDBLite consensus disorder prediction 484 504 - -
Vian4g00044 619 MobiDBLite consensus disorder prediction 170 213 - -
Vian4g00044 619 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vian4g00044 619 Gene3D - 33 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00044 Vian-Chr4 441296 444505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00044 23 157 Response Regulator Gene Family AT5G24470 77.778 2.47e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian4g00044 Response_reg 1.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00044 K12130 - gmx:100779346 924.08