Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian4g00040 | ATGCAGCTTGTGAGCTCCGTGGTGCTACCGATGGCACTGCAATCGGCGACGGAGCTGGGTGTGTTTGAGGTGCTGAAAGAAGCGGGTGAAGGTGCTAAGCTCTCTGCAAAGGACATAGCATCCAAGATTTCCTGCACCAACCCAGAAGCAGCCTCAATGCTAGATCGTCTTCTCGCTCTTCTTTCCTCTCACTCCATTCTTGACTCTTCCCTCGTTTCCGAAAACCTTGTCCCTCCCACCTTTCACAGGCTCTACTCCATCACTCCCCTCGCCGCATTCTTTGCTCGCGATTCCGACGGGGTTTCATTAGGACCAGCCATAGCCTTGGTCCAAGACAAAATCTTCCTAAGCTGCTGGAGTGAGCTGAAAGATGCAATTCGGGAGGGGGGTGTTCCCTTCGACAGGATTTATGGCACCCATGTTTTTGAGTATCCAAGGTTGGACTCAAGGTTCAATAAAGTTCTCAACACAGGAATGATCAATCACACGACTTTGGTGATGAAGAGGGTTCTGAAATCCTACAAAGGTTTTGAGGGGATAAAAAGGCTGGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAACATGATAACTTCAAAATACCCTCATATCCATGGCATCAATTTCGACTTGCCTCATGTCATTCAAGATGCTCCTTCCTATCCTGGAGTGGACCACGTTTGCGGAGATATGTTTGAAAACGTGCCTAAAGGAGATGCCATTTTTTTGAAGTGGATTCTCCATGATTGGAGCGATGAAGAGTGTGTGAAGCTGTTGAAGAACTGCTACGATGCAATTCTTGATGATGGAAAGGTGATAGTAGTGGAAGCAGTTCTTCCAACAATACCAGAGACTAACAGTGCTGTTTATAAGACAATTTTAGAATTGGATGCTTCGATGATGACTCACGGGGTAGGGAAAGAGCGATGCGAACAAGAGTTCATGGATTTGGCAACTGCAGCTGGATTTAGTGGCAAGAGATATGAATGTCGTGCAAACATTTTCTCTGTTATGGAGTTCTTCAAGTAA | 1029 | 0.4636 | MQLVSSVVLPMALQSATELGVFEVLKEAGEGAKLSAKDIASKISCTNPEAASMLDRLLALLSSHSILDSSLVSENLVPPTFHRLYSITPLAAFFARDSDGVSLGPAIALVQDKIFLSCWSELKDAIREGGVPFDRIYGTHVFEYPRLDSRFNKVLNTGMINHTTLVMKRVLKSYKGFEGIKRLVDVGGGLGININMITSKYPHIHGINFDLPHVIQDAPSYPGVDHVCGDMFENVPKGDAIFLKWILHDWSDEECVKLLKNCYDAILDDGKVIVVEAVLPTIPETNSAVYKTILELDASMMTHGVGKERCEQEFMDLATAAGFSGKRYECRANIFSVMEFFK | 342 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian4g00040 | 342 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 97 | IPR036390 | - | |
| Vian4g00040 | 342 | FunFam | Caffeic acid O-methyltransferase | 95 | 342 | - | - | |
| Vian4g00040 | 342 | Gene3D | - | 8 | 170 | IPR036388 | - | |
| Vian4g00040 | 342 | Pfam | O-methyltransferase domain | 119 | 324 | IPR001077 | GO:0008171 | |
| Vian4g00040 | 342 | Gene3D | Vaccinia Virus protein VP39 | 152 | 331 | IPR029063 | - | |
| Vian4g00040 | 342 | Pfam | Dimerisation domain | 11 | 61 | IPR012967 | GO:0046983 | |
| Vian4g00040 | 342 | PANTHER | O-METHYLTRANSFERASE | 3 | 327 | IPR016461 | GO:0008168 | |
| Vian4g00040 | 342 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 99 | 340 | IPR029063 | - | |
| Vian4g00040 | 342 | PIRSF | O-mtase | 1 | 342 | IPR016461 | GO:0008168 | |
| Vian4g00040 | 342 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 342 | IPR016461 | GO:0008168 | |
| Vian4g00040 | 342 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 94 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian4g00040 | Vian-Chr4 | 420336 | 422419 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian4g00040 | 1 | 342 | Monolignol Biosynthesis Gene Families | AT5G54160 | 51.312 | 1.56e-126 | 365 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian4g00040 | K13066 | - | gmx:100803633 | 504.212 |