LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00038	ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACACGAAAACCATATACTATCACAAAGCAAAGAGAAAGATGGACCGAGGAGGAACATAATAGATTTCTGGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCACATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGTTGGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAGTAGGACAAGCTCTTGATATAGACATACCCCCTCCAAGGCCTAAAAGAAAACCAAGCAATCCTTATCCCAGGAAGATCAATGCTGCTGTCCCAAAGAATGGAAAGTCTCTCCTTTCATTTGCATCTTCACATGGTAAACTTGCACTGGACTTGGAGAAAGAACCACTTCCAGAGAAGCATTATCAGGAGGACCAAATGCCAACAACTGTAAAAGAAAATAACGACGAAAACAGCTCAAAAATATTTACCATTCTCCAGGAAGCAGCACCTGCCTCATCTCTATCACTGCCGCTCAGAAATCCAAGTCCCTTGAGGGAGTTTATACCCTCAATAAAAGAGGTAACAACTCTAGATGAAACAAATGAGTCTTTTATTACTGATGAGCTTCAAAATCACAAGTTAGAGTTAGATGACGGAGAGCACAAACAAGAGACTAATGCCACTTGTAAAGTCTCTAAGTCGGAGAATTCTGGTACTTTGAAATTGGTTCAAACTGAGAAAACAGATGGGATGCAAGGAAATCAGAATTACCCGAGACATGTCGCTGTGCACGTTGTTGACGAGAAGTTTAATGGGCAACCTAAGATTGTCACAAACTCTGCTGCATCAAACATAAGTGAAAGTCAAAACAACACAGCACGGTCCTCTCTTCATCAATCGTTTTCTCCTTGTCCTCCCTTCTTACAACACAATCAGGATGATTACCATTCATTTCTTCATATGTCCTCCACGTTTTCAAGTCTTGTTGTCTCTACCTTGCTGCAAAATCCTGCTGCCCATGCTGCTGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCGTAGATTCTCCCGTGTGCACTCCTCCTAGTGTGACAGCTATTACAGCAGCTACAGTTGCTGCCGCAACTTCATGGTGGGCTGCCCATGGACTGCTTCCTTTGTGTACTCCACTTCATACTGCCTTTGCGTGTCCTCCTGCACCAGCGACTGCAGCTCCATCCATGACTCTCGGTCAATCACAGCACAAAAACCAACAAGGAGAGGTTAAGCCAGAAAATCCTCCTCCAGAACAATCGGAAGTTCTGCGAGCTCAACACTCAGCTTCCAAGTCACCAGCTGTTTCTTCATCAGAATCTGAGAAGAAGGGAGATACCAATGTAAATACTGCACCAAAGGCTACTAATGATGAGATGAACCAAGCGATTTCCGAGAATCCCGATTCCGACAAAATAAACGGTAGAAAACCTGTAGACCGTTCCTCGTGTGGTTCTAACACAACCTCTAGCAGTGAAGAGACTGAGATACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCAAACAAACCTGATACAAACCTTTTAGGTTCTGAGCCTAATAATCGCCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGGCTTGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCTCCTCATGATTTGATAAATGCAGATAATCAGATTCACAGCATCAACAAGCAAAACGAAAACTACAAAGATGAAGACCTTGAAACCAAAAAACACAGTCCTATTTGTGATGGGCTGCAGAAAAGTTTGTCATTTGTCAAAGATAATGATGAAGAGGAGGGATTGCTAACCATGGGTCTTGGACAAGGAAAGCTGAAGATTCGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAGGCAAAGGAAAACATGATCGGAACGGCCTGCAACCAAGGTGAAGAGAAAGGTCCAAAGAGAATACGCTTGAACGGGGAAGCTTCAACTTGA	2067	0.4388	MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPVGQALDIDIPPPRPKRKPSNPYPRKINAAVPKNGKSLLSFASSHGKLALDLEKEPLPEKHYQEDQMPTTVKENNDENSSKIFTILQEAAPASSLSLPLRNPSPLREFIPSIKEVTTLDETNESFITDELQNHKLELDDGEHKQETNATCKVSKSENSGTLKLVQTEKTDGMQGNQNYPRHVAVHVVDEKFNGQPKIVTNSAASNISESQNNTARSSLHQSFSPCPPFLQHNQDDYHSFLHMSSTFSSLVVSTLLQNPAAHAAASFAATFWPYANAETSVDSPVCTPPSVTAITAATVAAATSWWAAHGLLPLCTPLHTAFACPPAPATAAPSMTLGQSQHKNQQGEVKPENPPPEQSEVLRAQHSASKSPAVSSSESEKKGDTNVNTAPKATNDEMNQAISENPDSDKINGRKPVDRSSCGSNTTSSSEETEILEKDEKEKEEPNKPDTNLLGSEPNNRRSRSISNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLINADNQIHSINKQNENYKDEDLETKKHSPICDGLQKSLSFVKDNDEEEGLLTMGLGQGKLKIRRTGFKPYKRCSVEAKENMIGTACNQGEEKGPKRIRLNGEAST	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00038	688	MobiDBLite	consensus disorder prediction	669	688	-	-
	Vian4g00038	688	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-
	Vian4g00038	688	SMART	sant	23	71	IPR001005	-
	Vian4g00038	688	MobiDBLite	consensus disorder prediction	532	553	-	-
	Vian4g00038	688	FunFam	protein REVEILLE 6 isoform X1	26	74	-	-
	Vian4g00038	688	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	22	71	IPR006447	GO:0003677
	Vian4g00038	688	MobiDBLite	consensus disorder prediction	412	554	-	-
	Vian4g00038	688	Gene3D	-	26	73	-	-
	Vian4g00038	688	ProSiteProfiles	SANT domain profile.	22	73	IPR017884	-
	Vian4g00038	688	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	73	IPR017930	-
	Vian4g00038	688	MobiDBLite	consensus disorder prediction	413	432	-	-
	Vian4g00038	688	CDD	SANT	26	69	IPR001005	-
	Vian4g00038	688	PANTHER	SWI/SNF COMPLEX-RELATED	7	572	-	-
	Vian4g00038	688	ProSiteProfiles	Myb-like domain profile.	19	69	IPR001005	-
	Vian4g00038	688	MobiDBLite	consensus disorder prediction	440	487	-	-
	Vian4g00038	688	MobiDBLite	consensus disorder prediction	512	530	-	-
	Vian4g00038	688	Pfam	Myb-like DNA-binding domain	24	67	IPR001005	-
	Vian4g00038	688	Coils	Coil	583	603	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00038	Vian-Chr4	396561	407882	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vian4g00038		Myb_DNA-binding	2.4e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00038	K12133		-	gmx:778086	933.71