Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00035 ATGGAGGATGGGAGTAGGGTTCCGGCAGGGGATGACCCCTCTTACTGGCTGGATGCGTGTGAAGACATATCATGTGATTTCATTGATTTTGATGTCTCATCCATAGTTTCAGAGCAGCCTGACAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTCTGGACAGCATAAAAAACGGTGCTGGTCTCCCTCTGAATCATGGTGAACCTGCTTCCAACTCTAATGGCACAGCAGCAGGAGCAGGTGAAGTTTGGCTTCCCTCCAATGCCACTTTGGCGGATGGGGGAAATCGTCATCCTCATACTCCTGTTCCTGCTTCCGCTGATGCTGCTTTTGACCATTCTGCTACTGTTCGGAATAATGGGTCGAGTAAACTGTCTAATGGGAATGAAGGGGGAGTTTTGGTTAATTATTCTAAGGAAAGGGGGGTTCTGAATGGTGGCCATGATGTTGATAGTGAAGAAAGGTGCAGCAAAAGGGCTCGGCTTGGTGGCTACAAGAATGAGAGACCTCATTATGGCAGAGGTAATTATCAAGGCAAGGAGAGGGAGAGGTGTTTTAATAATAACAGAAAGAGGCCACGGGATAGGGATGAGGTCGACAGGAGGGACAGGGATGGTGGTGGAAGGAAAAGAGAACATTGTGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGAGATTGGAGGGATAGAGAACCTAGGGGTTACTGGGAGAGGGATAAATCAGGTAACAATGACATGGTCTTTCGCCCAGGCGCTTGGGAACCTGAGCGTAATCGAGAAGAAAAAATGGTTAATGATGTGAAACAAGAGAGCAATGGAAAGCTTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAATTAGATGTTCTTGACCAGGCAAAGAGGAAAAATACTATAGCTTTCCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTTATTAAAAGTATACAAGAGAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCATTAGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGAACTGGTTATCAAGTAGGCCACTATTGTGGAGAAATGGGACAGGATTTCTGGGATGCACGAAGGTGGCAGCGTGAATTTGATACCAAACATGTATTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGTATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCTGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACTCCCAAAGAGAAGAGACCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATTAAAATTCGCAATCTTGAGAGTAAGTTAGATTCTATAGTTTGCACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTCGAGTATGACAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACTGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCTCTTGGTGAACTGGGACAATGGTGTGCATTCAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTTTCTCTACTGAAATGCCAACTGTCAGAGGGAGCAGTTTCTGACAAAAATACTGATATTGATGACTTGGAGAATGGTGCGGCTCAAAGTGTTTCTGAGCATGAAGAGATGGAAGAAGGGGAACTTCCAGACAGTCATGTTGTCTCTGGTGGAGAGCACGTGGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATAAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTTTCTGCATTAGTTCTGCCAAAGGTCTTTGCGGAGCTTCCATCTCTTAGTTTTGTTAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGAACCCACCAAATGCAAGATACAATTTCCAAATTCCGTGATGGGCGGGTCACATTGTTGGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATTCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAAACTGTTTTGGCATACATTCAATCCAGGGGGCGTGCTAGAAAACCTGGATCTGATTACATCCTGATGGTGGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGTAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTGATTTCTGTTGAAACTAGGCCTGGAACTGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGTCTTAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCATGAGAAAACAGGAGGTCCCACAGAATATTCTTGCAAGCTTCAACTGCCTTGTAATGCACCATTTGAAAATCTCGAGGGCCCAATATGCAGTTCTATGCGTCTAGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAGCAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAATTCCAAATTGCTTCAACTTTACATGTATGCTGTGAAGTGTGAAAATATTGGCCATTCAAAGGATCCGTTCTTGATTCAAGTTTCAAATTTTGCAATACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTATGGGGTTGATAAGTATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTGATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACACCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGTTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGTGTCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGGTTTGGAAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCCACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGGTTGGTTCCTAGTAGAGATTCCATGCAAACACAAAAGCAAATTAATATTACTACCCACGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCATTCGGGGAAGAGGTTTTATGTTGATTCTATACGCTATGACATGTCAGCAGAAAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTATAGCTCATATGCTGATTACTACAAGCAAAAATATGGAGTTGATTTGATTTACAAGCAGCAACCTCTAATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGCTTTGAGCACTGTGAAGCACATGAAGGCGAATCTGAAGAGACACATGACAAAACTTATTATGTTTTCCTTCCTCCCGAGCTATGTCTTGTACACCCACTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTGAAGAATATGATAAACTATCCTGTCCAAACTTCAAAGATCTTGGAAGCCTTGACCGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCTGAGCTTCTCGGAGACGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCTTAAAATACCCTCAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAATATGCATTAAGTAGAGGGCTTCAATCATACATTCAGGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAAGATACCAAGGATGGGGAGTCCTCTTTGTTTGACCAGGAGCGATCCATTTCTAAAACTGAGAAGATGGATTGTCACACGGATGGATATGATGATGAGATGGAAGACGGCGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTAGAAGGTGGTAAAAATGCTGCCAATCACCTTATGAAATGGATTGGCATTCAAATAGAGTTTGATCCCGATACGATGGATTGTGCAAGAAAGCCATTTAATGTTCCAGATAGCATACTCAGGAGTGTTGACTTTGATGCTTTAGAGGGTGCTTTAAATCTAAAGTTTAAAGACAAGGGGCTGTTGATAGAATCCATAACGCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTCGTTGGTGATGCTGTCTTGGATCATCTTATCACCAGACACTTGTTTTTCACTTACACAAATCTGCCACCAGGACGTCTCACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCACGTGTTGCAGTTAAACACAACCTTCATGTACATCTCCGACATGGGTCCAGTGCCCTAGAGAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTCGAATCTATTGCGGGTGCCATTTTTCTTGACAGTGGAAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGAGAGCTGCAGGAGCGATGCCAACAGCAAGCCGAAGGCTTAGAGTATAAAGCAAGCCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGAGCTGCTCAAAATCCACAGAAAAAAATGGCACAAAAGTTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGTGGGAAAAACTCAGGAAAAGAATGATGAAAGCGGGAAAAAGAATGGAAACCAGTCATTTACTAGGCAAACATTAAATGATATCTGCTTACGAAGAAATTGGCCTATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCTAAGAGATTTACATTTGCGGTGCGAGTCAATACTACTGATCGGGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGATTCAGCAGCCGTTCTTCTCTTAGAACTACTAAACAAATTATACGTGAAAAAGATGGAGTGA 5874 0.4356 MEDGSRVPAGDDPSYWLDACEDISCDFIDFDVSSIVSEQPDNPSNQDFFGGIDKILDSIKNGAGLPLNHGEPASNSNGTAAGAGEVWLPSNATLADGGNRHPHTPVPASADAAFDHSATVRNNGSSKLSNGNEGGVLVNYSKERGVLNGGHDVDSEERCSKRARLGGYKNERPHYGRGNYQGKERERCFNNNRKRPRDRDEVDRRDRDGGGRKREHCGAVGRRDVRDRDWRDREPRGYWERDKSGNNDMVFRPGAWEPERNREEKMVNDVKQESNGKLDKKSEEAKERVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNTDIDDLENGAAQSVSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVETRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKTGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLQLYMYAVKCENIGHSKDPFLIQVSNFAILFGNELDAEVLSMSMDLFIARTVTTKASLVFMGLISITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMFGDKSVDPMNQIDWCLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPSRDSMQTQKQINITTHGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHCEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSRGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEKMDCHTDGYDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTMDCARKPFNVPDSILRSVDFDALEGALNLKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDESGKKNGNQSFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYVKKME 1957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00035 1957 CDD RIBOc 1632 1787 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 FunFam Endoribonuclease dicer-like protein 289 529 - -
Vian4g00035 1957 Pfam Type III restriction enzyme, res subunit 296 460 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vian4g00035 1957 FunFam Endoribonuclease dicer-like 1 884 985 - -
Vian4g00035 1957 CDD PAZ_CAF_like 1225 1374 - -
Vian4g00035 1957 Gene3D - 288 532 IPR027417 -
Vian4g00035 1957 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1875 1950 IPR014720 -
Vian4g00035 1957 MobiDBLite consensus disorder prediction 978 1002 - -
Vian4g00035 1957 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 889 984 IPR005034 GO:0016891
Vian4g00035 1957 SUPERFAMILY RNase III domain-like 1388 1594 IPR036389 GO:0004525|GO:0006396
Vian4g00035 1957 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 301 478 IPR014001 -
Vian4g00035 1957 SMART DRBM_3 1791 1852 IPR014720 -
Vian4g00035 1957 SMART DRBM_3 1876 1949 IPR014720 -
Vian4g00035 1957 Gene3D - 687 853 IPR027417 -
Vian4g00035 1957 MobiDBLite consensus disorder prediction 1853 1874 - -
Vian4g00035 1957 PANTHER DICER-RELATED 1248 1855 - -
Vian4g00035 1957 Gene3D Dicer dimerisation domain 884 985 IPR038248 -
Vian4g00035 1957 SUPERFAMILY dsRNA-binding domain-like 1879 1950 - -
Vian4g00035 1957 SMART PAZ_2_a_3 1234 1396 IPR003100 GO:0005515
Vian4g00035 1957 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 701 861 IPR001650 -
Vian4g00035 1957 CDD SF2_C_dicer 694 824 - -
Vian4g00035 1957 ProSiteProfiles PAZ domain profile. 1232 1372 IPR003100 GO:0005515
Vian4g00035 1957 Pfam Ribonuclease III domain 1429 1575 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 Pfam Ribonuclease III domain 1651 1764 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 SMART ultradead3 290 493 IPR014001 -
Vian4g00035 1957 MobiDBLite consensus disorder prediction 164 224 - -
Vian4g00035 1957 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1790 1853 IPR014720 -
Vian4g00035 1957 Pfam Helicase conserved C-terminal domain 697 814 IPR001650 -
Vian4g00035 1957 Gene3D - 1881 1951 - -
Vian4g00035 1957 Pfam PAZ domain 1254 1392 IPR003100 GO:0005515
Vian4g00035 1957 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1875 1948 - -
Vian4g00035 1957 Gene3D Ribonuclease III domain 1612 1785 IPR036389 GO:0004525|GO:0006396
Vian4g00035 1957 Gene3D Ribonuclease III domain 1393 1589 IPR036389 GO:0004525|GO:0006396
Vian4g00035 1957 ProSiteProfiles Ribonuclease III family domain profile. 1415 1575 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 FunFam Endoribonuclease dicer-like protein 1394 1587 - -
Vian4g00035 1957 MobiDBLite consensus disorder prediction 236 290 - -
Vian4g00035 1957 SMART helicmild6 730 816 IPR001650 -
Vian4g00035 1957 ProSitePatterns Ribonuclease III family signature. 1651 1659 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 828 IPR027417 -
Vian4g00035 1957 MobiDBLite consensus disorder prediction 1853 1868 - -
Vian4g00035 1957 ProSiteProfiles Ribonuclease III family domain profile. 1616 1764 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 SMART riboneu5 1411 1595 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 SMART riboneu5 1631 1787 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 FunFam Endoribonuclease Dicer 1 1252 1370 - -
Vian4g00035 1957 FunFam Endoribonuclease dicer-like 1 1611 1785 - -
Vian4g00035 1957 Gene3D - 1788 1867 - -
Vian4g00035 1957 SUPERFAMILY PAZ domain 1248 1372 IPR036085 GO:0005515
Vian4g00035 1957 Gene3D paz domain 1248 1370 - -
Vian4g00035 1957 Pfam Dicer dimerisation domain 889 977 - -
Vian4g00035 1957 MobiDBLite consensus disorder prediction 975 1002 - -
Vian4g00035 1957 CDD DSRM_DCL_plant 1881 1942 - -
Vian4g00035 1957 FunFam endoribonuclease Dicer homolog 1 1881 1950 - -
Vian4g00035 1957 SUPERFAMILY RNase III domain-like 1615 1786 IPR036389 GO:0004525|GO:0006396
Vian4g00035 1957 CDD RIBOc 1411 1593 IPR000999 GO:0004525|GO:0006396
Vian4g00035 1957 MobiDBLite consensus disorder prediction 255 290 - -
Vian4g00035 1957 FunFam Endoribonuclease dicer-like 1 688 850 - -
Vian4g00035 1957 SUPERFAMILY dsRNA-binding domain-like 1746 1859 - -
Vian4g00035 1957 CDD DEXHc_dicer 293 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00035 Vian-Chr4 370041 382991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00035 713 856 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 2.03e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00035 K11592 - gmx:100811631 3574.25