Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00033 ATGGCTTCTGCTTGTGCCTCCTCTGCCATTGCTGCTGTTTCCATCTCCACGCCAAGTTCCCAGAAGAATGGATCAGTGTTGGGAACCCCCAAAGCTTCTTTTCTTGGTGGAAGGAAATTGAGGGTGAACAAATACACAGCAGCAGTTGGAGTACGATCCACCACTACAGTGTGTGCTGTAGCAGACCCTGACAGGCCCCTATGGTTTCCCGGCAGCACCCCTCCTCCATGGCTTGACGGCAGTCTCCCTGGAGACTTTGGCTTTGACCCTCTTGGTCTTGGATCTGATCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGGATTTTCATTCCAGAATTCCTGACAAAGATTGGTGTTTTAAACACACCCTCATGGTACACAGCTGGAGAACTTGAATACTTCACAGACACCACTACCCTCTTCATTGTTGAGCTCTTTTTCATTGGGTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAGCCAGGGTGTGTGAACACTGACCCCATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGTTACCCAGGTGGGCTTTGGTTTGACCCTCTTGGATGGGGAAGTGGTTCTCCCGAGAAGATCAAGGAGTTGAGAACTAAGGAGATCAAGAATGGGAGATTGGCCATGTTGGCTGTGATGGGTGCATGGTTCCAGCACATATACACTGGCACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTCACCCCTAAGTGA 813 0.5055 MASACASSAIAAVSISTPSSQKNGSVLGTPKASFLGGRKLRVNKYTAAVGVRSTTTVCAVADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00033 270 FunFam Chlorophyll a-b binding protein, chloroplastic 75 260 - -
Vian4g00033 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 24 268 IPR001344 GO:0009765|GO:0016020
Vian4g00033 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
Vian4g00033 270 SUPERFAMILY Chlorophyll a-b binding protein 60 268 - -
Vian4g00033 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00033 Vian-Chr4 330815 332032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00033 52 270 Chloroplast and Mitochondria Gene Families AT3G61470 90.000 8.20e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00033 K08908 - gmx:100784089 532.332