Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00030 ATGAGAGCTCCCACTCCCATAGACAGACCAACCCCATCAACATCAACATCAACAACGTCCACACCACCCTCTTCCATCTACATGATTCCCAAGTTAATGGTCTTTGTCACTCTCCTGTTTCTTCTTCTCTCTGGGCTCCTTCTTCCTGTTCAAGCCGCCTCCTGTAACCAACTTGATAGAGACTCACTCTTGGCCTTCTCCAGGAACATATCCACTCCTTCTCCTCTCAATTGGTCTGCTTCTGTTGATTGTTGTCTGTGGGAAGGCATTAAGTGTGATGAGAATTTCAGAGTCATACATCTATTGCTACCATCCAGGGGTCTCGCCGGCTTCATCTTCCCATCTCTCATAAATCTCACTGCTCTCTCCCTTCTTGATCTATCCCAGAACCGCTTATCCGGTAATCTCCCAGACCAATTTTTCTCACTTCTTAATCACCTGCAGATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCACCCTTTGTTGCTAATACCAGTGGCAATACCATTCGGGAGCTTGATCTGTCCAGTAATTTATTCCACGGAAAACTACCACTCTCTCTCCTTCAGCACCTGGCAGATGCAATCGCTGCAGGGAGTTTGACATCTTTTAACGTCAGTAACAACAGCTTCACTGGTCAAATTCCCACTTCTCTCCTCTGCAATAACCACAGTAGCTCATCCTCTCTTAGATTCTTGGATTATTCCTCCAATGATTTCTCTGGCATGATTCAGCCAGGACTAGGAGCATGTTCCAAGCTGGAGAAATTTCGAGCAGGCTCCAATTCCCTATCCGGGCCCCTTCCTGGTGATATTTTCGATGCTGTTTCTCTCAAAGAAATCTCCTTGCCCCTCAATAAACTCGGTGGAACCCTTGGAGAGAGCATTGTTAACCTTGTCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACCGGGCCCATTCCCTCTGATATTGGTAAGCTCTCCAAATTGGAACGTTTACTTCTTCATGCCAACAAAATAAATGGCACTCTACCCCCATCTCTAATGGACTGTGTCAATCTTGTCATGTTGGATGTAAGGCTCAACTTGTTGGAGGGAAGCCTCTCGGCATTGAATTTCTCCGGACTCCTCAGACTCTCAGCACTTGACCTCGGCAACAATAGTTTTACTGGTATTATACCACCTACCATGTATGCATGCAAATCCCTTAAAGCAGTGAGACTTGCATCTAATTATTTTGAAGGACAGATCTCACCTGATATACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAACCTCAGTAATGTCACTGGAGCTCTGAGGCTGCTTATGGGACTCAAGAACCTTAGCACTCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGTCAACATAACAAACCCAGATGGATTCCAAAAGATCCAAGTTCTGGGTTTAGGCGGTTGTAATTTCACAGGTCAAGTACCACACTGGCTTTATAATCTGAAGAAGCTCGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGCACACGCTTCCCGAGCTTTTCTACGTAGACTTGTCTTTTAACCTCCTCACAGGAATGTTTCCAGCTGAGCTCACAACGCTTCCAGCACTAACATCACAACAGACCTATGACAAAGTAGAGAGGACTTACCTGGAGTTACCCGTGTTTGCTAATGCCAACAATGTCTCTCAGATGCAATACAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAACGGCAGTATCCCGGTAGAGATTGGCAAACTCAGAGTCCTTCATCAGCTGGACCTTAGTAACAACAAATTCTCTGGCAATATCCCAGCGGAAATTTCTAACTTGATTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTTTCCGGGGAAATTCCCGTTTCACTCAAAAGCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATACAATAATCTTGAAGGACCGGTACCCACAGGTGGCCAATTTGATACTTTCTCCTTTTCTAGCTTCGAAGGAAACCCACAGTTGTGTGGTTCAGTTGTTCGGCGGTCTTGTCTTCCTCAACAGAGTACTACTGCTCGTAGTCACAGCTCAAGCAAAAAGCTGATAATTGGATTTGCCATTGCAGCCAGTTTTGGCCTTGTTTCCTTCGTTTCAGTGTTGATAGTGTGGGTAATATCCAAGAGGAGGATCAATCCAGGTGGAGAACCTGACAAGATTGAAGTAGAATCAATTTCTATCAGCTCTTACAGTGGGGTTCATCCCGAGGTTGACAAAGAGGCCAGCCAAGTGGTACTGTTCCCTAATAAAACAAGTGAAATCAAGGACCTTACCATAGTTGAAATATTAAAAGCTACAGAAAACTTCAGTCAGGCAAACATAATAGGATGTGGAGGTTTTGGTTTGGTGTATAAAGCAACATTACCAAATGGAACTGCTCTGGCCATCAAGAAACTTTCAGGAGAATTAGGTCTAATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTGTCGACAGCACAGCATGAGAATGTGGTTGCCTTGCAAGGCTACTGTGTGCATGAGGGTGTTCGGCTTCTGATATACACTTACATGGAAAATGGAAGTCTGGATTACTGGCTGCATGAGAAGGCAGATGGTCCATCTCAGATTGATTGGCCTACCCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCACCAAATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGCAATATACTTCTTAATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGCTGGCCAGGCTCATTCTTCCTTACCACACTCACGTTACAACTGAACTTGTAGGCACATTAGGATACATACCCCCAGAGTATGGACAAGCATGGGTGGCAACTCTGAGAGGAGACGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTAACGGGGAGGAGGCCTGTTGATGTAAGCAAGCCAAAAATGTCAAGGGAGTTAGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGAAAACAAGATCAAGTCTTTGATCCATTTCTGAGAGGCAAGGGCTTTGAAGAAGAGATGCTCAAGGCTCTTGATGTAGCCTGCATGTGTGTCAGCCATAATCCTTTCAAGAGACCATGCATCCCAGAAGTTGTTGAATGGCTGAGGAATGTAGGATTATCCAACCACCATATGAATAAAGACTAG 3282 0.4427 MRAPTPIDRPTPSTSTSTTSTPPSSIYMIPKLMVFVTLLFLLLSGLLLPVQAASCNQLDRDSLLAFSRNISTPSPLNWSASVDCCLWEGIKCDENFRVIHLLLPSRGLAGFIFPSLINLTALSLLDLSQNRLSGNLPDQFFSLLNHLQILDLSYNRLSGELPPFVANTSGNTIRELDLSSNLFHGKLPLSLLQHLADAIAAGSLTSFNVSNNSFTGQIPTSLLCNNHSSSSSLRFLDYSSNDFSGMIQPGLGACSKLEKFRAGSNSLSGPLPGDIFDAVSLKEISLPLNKLGGTLGESIVNLVNLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANKINGTLPPSLMDCVNLVMLDVRLNLLEGSLSALNFSGLLRLSALDLGNNSFTGIIPPTMYACKSLKAVRLASNYFEGQISPDILGLQSLAFLSISTNNLSNVTGALRLLMGLKNLSTLMLSQNFFNEMMPDDVNITNPDGFQKIQVLGLGGCNFTGQVPHWLYNLKKLEVLDLSYNQISGSIPPWLHTLPELFYVDLSFNLLTGMFPAELTTLPALTSQQTYDKVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPVEIGKLRVLHQLDLSNNKFSGNIPAEISNLINLEKLYLSGNQLSGEIPVSLKSLHFLSAFSVAYNNLEGPVPTGGQFDTFSFSSFEGNPQLCGSVVRRSCLPQQSTTARSHSSSKKLIIGFAIAASFGLVSFVSVLIVWVISKRRINPGGEPDKIEVESISISSYSGVHPEVDKEASQVVLFPNKTSEIKDLTIVEILKATENFSQANIIGCGGFGLVYKATLPNGTALAIKKLSGELGLMEREFKAEVEALSTAQHENVVALQGYCVHEGVRLLIYTYMENGSLDYWLHEKADGPSQIDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVSKPKMSRELVAWVQQMRSEGKQDQVFDPFLRGKGFEEEMLKALDVACMCVSHNPFKRPCIPEVVEWLRNVGLSNHHMNKD 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00030 1093 ProSiteProfiles Protein kinase domain profile. 809 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00030 1093 SUPERFAMILY L domain-like 78 316 - -
Vian4g00030 1093 PRINTS Leucine-rich repeat signature 144 157 - -
Vian4g00030 1093 PRINTS Leucine-rich repeat signature 122 135 - -
Vian4g00030 1093 MobiDBLite consensus disorder prediction 8 22 - -
Vian4g00030 1093 Gene3D Ribonuclease Inhibitor 371 713 IPR032675 -
Vian4g00030 1093 SMART serkin_6 809 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00030 1093 Pfam Protein kinase domain 810 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00030 1093 ProSitePatterns Protein kinases ATP-binding region signature. 815 838 IPR017441 GO:0005524
Vian4g00030 1093 Gene3D Transferase(Phosphotransferase) domain 1 885 1092 - -
Vian4g00030 1093 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515
Vian4g00030 1093 Gene3D Phosphorylase Kinase; domain 1 771 884 - -
Vian4g00030 1093 Gene3D Ribonuclease Inhibitor 276 370 IPR032675 -
Vian4g00030 1093 Pfam Leucine rich repeat N-terminal domain 59 93 IPR013210 -
Vian4g00030 1093 SMART LRR_typ_2 423 445 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 302 325 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 611 634 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 449 472 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 326 350 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 119 143 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 635 659 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 375 399 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 502 526 IPR003591 -
Vian4g00030 1093 SMART LRR_typ_2 144 168 IPR003591 -
Vian4g00030 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 272 367 - -
Vian4g00030 1093 Pfam Leucine Rich Repeat 637 659 IPR001611 GO:0005515
Vian4g00030 1093 FunFam Tyrosine-sulfated glycopeptide receptor 1 372 710 - -
Vian4g00030 1093 Pfam Leucine rich repeat 481 539 IPR001611 GO:0005515
Vian4g00030 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 931 943 IPR008271 GO:0004672|GO:0006468
Vian4g00030 1093 ProSiteProfiles Leucine-rich repeat profile. 504 527 IPR001611 GO:0005515
Vian4g00030 1093 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 100 222 - -
Vian4g00030 1093 FunFam Leucine-rich repeat receptor-like protein kinase 885 1091 - -
Vian4g00030 1093 SUPERFAMILY L domain-like 235 694 - -
Vian4g00030 1093 FunFam Receptor-like protein 2 57 174 - -
Vian4g00030 1093 MobiDBLite consensus disorder prediction 1 22 - -
Vian4g00030 1093 Gene3D Ribonuclease Inhibitor 56 196 IPR032675 -
Vian4g00030 1093 FunFam Leucine-rich repeat receptor protein kinase MSP1 774 884 - -
Vian4g00030 1093 SUPERFAMILY Protein kinase-like (PK-like) 788 1080 IPR011009 -
Vian4g00030 1093 Gene3D Ribonuclease Inhibitor 197 275 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00030 Vian-Chr4 312792 316073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00030 33 743 Miscellaneous Gene Families AT1G17240 50.763 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vian4g00030 Pkinase 5.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00030 - - gmx:100782574 1846.63